Research workbench
AlphaFold monomer V2.0 prediction for methionine--tRNA ligase (Q8PMP0)
Analyse AlphaFold monomer V2.0 prediction for methionine--tRNA ligase (Q8PMP0) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q8PMP0
- Type
- protein
- Length
- 694 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x953a45c1afa6C5147a9c9dE66B77afE523F6E050
- Molecule
- Methionine--tRNA ligase
- UniProt
- Q8PMP0
- Pockets
- 3 · best druggability 0.73
Structure
1 distinct chain · 42% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Methionine--tRNA ligase | protein | 694 | 42% helix, 19% strand | Q8PMP0 |
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 784 | 0.73 | 0.78 | 77 | empty |
| 2 | 52 | 0.56 | 0.90 | 26 | empty |
| 3 | 202 | 0.45 | 0.73 | 26 | empty |
Compared structures
- 6WQ6 · Xanthomonas citri Methionyl-tRNA synthetase in complex with methionine · an experimental structure of the same protein · chain A against A, TM-score 0.78
- 6WQ6 · Xanthomonas citri methionyl-tRNA synthetase in complex with methionine · an experimental structure of the same protein · chain A against A, TM-score 0.78
- 6WQT · Xanthomonas citri methionyl-tRNA synthetase in complex with REP3123 · an experimental structure of the same protein · chain A against A, TM-score 0.78
- 6WQT · Xanthomonas citri Methionyl-tRNA synthetase in complex with REP3123 · an experimental structure of the same protein · chain A against A, TM-score 0.78
- 6WQI · Xanthomonas citri Methionyl-tRNA synthetase (apo) · an experimental structure of the same protein · chain A against B, TM-score 0.78
- 6WQI · Xanthomonas citri methionyl-tRNA synthetase (apo) · an experimental structure of the same protein · chain A against A, TM-score 0.78
- 6WQS · Xanthomonas citri Methionyl-tRNA synthetase in complex with REP8839 · an experimental structure of the same protein · chain A against A, TM-score 0.78
- 6WQS · Xanthomonas citri methionyl-tRNA synthetase in complex with REP8839 · an experimental structure of the same protein · chain A against A, TM-score 0.78
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8PMP0
- Elsewhere: UniProt Q8PMP0 · AlphaFold DB Q8PMP0
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