Research workbench
AlphaFold monomer V2.0 prediction for signal recognition particle 54 kda protein (P61010)
Analyse AlphaFold monomer V2.0 prediction for signal recognition particle 54 kda… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P61010
- Type
- protein
- Length
- 504 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x70189663D9D82ce5dB28B4Fdc41ba0b8D3788BD3
- Molecule
- Signal recognition particle 54 kda protein
- UniProt
- P61010
- Pockets
- 6 · best druggability 0.76
Structure
1 distinct chain · 59% helix, 8% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Signal recognition particle 54 kda protein | protein | 504 | 59% helix, 8% strand | P61010 |
Pockets
6 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 813 | 0.76 | 0.80 | 65 | empty |
| 2 | 90 | 0.42 | 0.79 | 25 | empty |
| 3 | 109 | 0.41 | 0.76 | 24 | empty |
| 4 | 91 | 0.36 | 0.74 | 17 | empty |
| 5 | 83 | 0.35 | 0.74 | 12 | empty |
Compared structures
- 7OBR · RNC-SRP early complex · an experimental structure of the same protein · chain A against x, TM-score 0.79
- 4UE5 · Structural basis for targeting and elongation arrest of Bacillus signal recognition… · an experimental structure of the same protein · chain A against D, TM-score 0.74
- 4UE5 · Structural basis for targeting and elongation arrest of bacillus signal recognition… · an experimental structure of the same protein · chain A against D, TM-score 0.74
- 2J37 · Model of mammalian srp bound to 80S rncs · an experimental structure of the same protein · chain A against W, TM-score 0.73
- 2J37 · Model of mammalian srp bound to 80S rncs · an experimental structure of the same protein · chain A against W, TM-score 0.73
- 6R6G · Structure of XBP1u-paused ribosome nascent chain complex with SRP. · an experimental structure of the same protein · chain A against AB, TM-score 0.72
- 7OBQ · Srp-sr at the distal site conformation · an experimental structure of the same protein · chain A against x, TM-score 0.53
- 7OBQ · SRP-SR at the distal site conformation · an experimental structure of the same protein · chain A against x, TM-score 0.53
- 6FRK · Structure of a prehandover mammalian ribosomal SRP and SRP receptor targeting complex · an experimental structure of the same protein · chain A against x, TM-score 0.51
- 2GO5 · Structure of signal recognition particle receptor (SR) in complex with signal recognition… · an experimental structure of the same protein · chain A against W, TM-score 0.20
- 2GO5 · Structure of signal recognition particle receptor (sr) in complex with signal recognition… · an experimental structure of the same protein · chain A against W, TM-score 0.20
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P61010
- Elsewhere: UniProt P61010 · AlphaFold DB P61010
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