Research workbench
AlphaFold monomer V2.0 prediction for U1 small nuclear ribonucleoprotein component SNU71 (P53207)
Analyse AlphaFold monomer V2.0 prediction for U1 small nuclear ribonucleoprotein… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P53207
- Type
- protein
- Length
- 620 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xd10960F956646DE8b64d3598984c91C2d5Af3D7b
- Molecule
- U1 small nuclear ribonucleoprotein component SNU71
- UniProt
- P53207
- Pockets
- 5 · best druggability 0.59
Structure
1 distinct chain · 50% helix, 6% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | U1 small nuclear ribonucleoprotein component SNU71 | protein | 620 | 50% helix, 6% strand | P53207 |
Pockets
5 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 426 | 0.59 | 0.75 | 33 | empty |
| 2 | 223 | 0.48 | 0.75 | 33 | empty |
| 3 | 66 | 0.42 | 0.81 | 16 | empty |
| 4 | 68 | 0.33 | 0.75 | 18 | empty |
| 5 | 51 | 0.27 | 0.74 | 15 | empty |
Compared structures
- 6N7P · S. cerevisiae spliceosomal E complex (UBC4) · an experimental structure of the same protein · chain A against H, TM-score 0.08
- 6N7P · S. cerevisiae spliceosomal E complex (UBC4) · an experimental structure of the same protein · chain A against H, TM-score 0.08
- 7OQE · Saccharomyces cerevisiae spliceosomal pre-A complex (delta BS-A ACT1) · an experimental structure of the same protein · chain A against J, TM-score 0.08
- 7OQC · The U1 part of saccharomyces cerevisiae spliceosomal pre-a complex (delta bs-a ACT1) · an experimental structure of the same protein · chain A against J, TM-score 0.08
- 7OQE · Saccharomyces cerevisiae spliceosomal pre-a complex (delta bs-a ACT1) · an experimental structure of the same protein · chain A against J, TM-score 0.08
- 7OQC · The U1 part of Saccharomyces cerevisiae spliceosomal pre-A complex (delta BS-A ACT1) · an experimental structure of the same protein · chain A against J, TM-score 0.08
- 6N7R · Saccharomyces cerevisiae spliceosomal E complex (ACT1) · an experimental structure of the same protein · chain A against H, TM-score 0.08
- 6N7R · Saccharomyces cerevisiae spliceosomal E complex (ACT1) · an experimental structure of the same protein · chain A against H, TM-score 0.08
- 8W2O · Yeast U1 snRNP with humanized U1C Zinc-Finger domain · an experimental structure of the same protein · chain A against H, TM-score 0.08
- 6N7X · S. cerevisiae U1 snrnp · an experimental structure of the same protein · chain A against H, TM-score 0.08
- 6N7X · S. cerevisiae U1 snRNP · an experimental structure of the same protein · chain A against H, TM-score 0.08
- 5ZWN · Cryo-EM structure of the yeast pre-B complex at an average resolution of 3.3 ångström… · an experimental structure of the same protein · chain A against X, TM-score 0.08
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P53207
- Elsewhere: UniProt P53207 · AlphaFold DB P53207
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