Research workbench
AlphaFold monomer V2.0 prediction for sodium channel protein type 7 subunit alpha (Q01118)
Analyse AlphaFold monomer V2.0 prediction for sodium channel protein type 7 subunit… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q01118
- Type
- protein
- Length
- 1,682 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x5c4adF1416281C09AE8eE1cbb80fF7e44cE86F97
- Molecule
- Sodium channel protein type 7 subunit alpha
- UniProt
- Q01118
- Pockets
- 20 · best druggability 0.86
Structure
1 distinct chain · 62% helix, 3% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Sodium channel protein type 7 subunit alpha | protein | 1682 | 62% helix, 3% strand | Q01118 |
Pockets
20 pockets found on a 1 Å grid, 13 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1088 | 0.86 | 0.86 | 96 | empty |
| 2 | 414 | 0.70 | 0.81 | 38 | empty |
| 3 | 561 | 0.66 | 0.76 | 66 | empty |
| 4 | 194 | 0.64 | 0.84 | 26 | empty |
| 5 | 428 | 0.64 | 0.78 | 40 | empty |
Modifications
Observed in the structure: 6 disulfide (disulfide).
Compared structures
- 7TJ9 · Cryo-EM structure of the human nax channel in complex with BETA3 solved in gdn · an experimental structure of the same protein · chain A against A, TM-score 0.65
- 7TJ9 · Cryo-EM structure of the human Nax channel in complex with beta3 solved in GDN · an experimental structure of the same protein · chain A against A, TM-score 0.65
- 7TJ8 · Cryo-EM structure of the human nax channel in complex with BETA3 solved in nanodiscs · an experimental structure of the same protein · chain A against A, TM-score 0.63
- 7TJ8 · Cryo-EM structure of the human Nax channel in complex with beta3 solved in nanodiscs · an experimental structure of the same protein · chain A against A, TM-score 0.63
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q01118
- Elsewhere: UniProt Q01118 · AlphaFold DB Q01118
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