Research workbench
AlphaFold monomer V2.0 prediction for small copii coat GTPase SAR1 (P20606)
Analyse AlphaFold monomer V2.0 prediction for small copii coat GTPase SAR1 (P20606) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P20606
- Type
- protein
- Length
- 190 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xf87a97E0A4bB354D834857B14296240B167cbe70
- Molecule
- Small copii coat GTPase SAR1
- UniProt
- P20606
- Pockets
- 1 · best druggability 0.46
Structure
1 distinct chain · 34% helix, 22% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Small copii coat GTPase SAR1 | protein | 190 | 34% helix, 22% strand | P20606 |
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 112 | 0.46 | 0.79 | 26 | empty |
Compared structures
- 1M2O · Crystal structure of the SEC23-SAR1 complex · an experimental structure of the same protein · chain A against B, TM-score 0.86
- 1M2O · Crystal Structure of the Sec23-Sar1 complex · an experimental structure of the same protein · chain A against B, TM-score 0.86
- 2QTV · Structure of SEC23-SAR1 complexed with the active fragment of SEC31 · an experimental structure of the same protein · chain A against B, TM-score 0.86
- 2QTV · Structure of Sec23-Sar1 complexed with the active fragment of Sec31 · an experimental structure of the same protein · chain A against B, TM-score 0.86
- 6GNI · Cryo-tomography and subtomogram averaging of SAR1-SEC23-SEC24 - fitted model. · an experimental structure of the same protein · chain A against B, TM-score 0.86
- 6GNI · Cryo-tomography and subtomogram averaging of Sar1-Sec23-Sec24 - fitted model. · an experimental structure of the same protein · chain A against B, TM-score 0.86
- 6ZGA · COPII on membranes, inner coat · an experimental structure of the same protein · chain A against C, TM-score 0.86
- 6ZGA · Copii on membranes, inner coat · an experimental structure of the same protein · chain A against C, TM-score 0.86
- 8BSH · COPII inner coat · an experimental structure of the same protein · chain A against B, TM-score 0.85
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P20606
- Elsewhere: UniProt P20606 · AlphaFold DB P20606
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