MolNFT v1 · #150232 · protein
Cryo-tomography and subtomogram averaging of SAR1-SEC23-SEC24 - fitted model.
6GNI: “Cryo-tomography and subtomogram averaging of SAR1-SEC23-SEC24 - fitted model.”. Electron microscopy, 3 ligands (GNP, ZN, MG). MolNFT v1 #150232 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6GNI
- Type
- protein
- Length
- 1,632 residues
- Chains
- 3
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P15303, P40482, P20606
- Ligands
- GNP, ZN, MG
Structure
electron microscopy · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 733 | — | P15303 |
| E | — | protein | 735 | — | P40482 |
| B | — | protein | 164 | — | P20606 |
Ligands and binding sites
- GNP · Phosphoaminophosphonic acid-guanylate ester · ligand · chains A, B
- ZN · Zinc ion · metal · 2 copies · chains A, E
- MG · Magnesium ion · metal · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6GNI · Cryo-tomography and subtomogram averaging of Sar1-Sec23-Sec24 - fitted model. · the same entry in another collection · chain A against A, TM-score 1.00
- P40482 · AlphaFold monomer V2.0 prediction for protein transport protein SEC24 (P40482) · a predicted model of the same protein · chain E against A, TM-score 1.00
- P15303 · AlphaFold monomer V2.0 prediction for protein transport protein SEC23 (P15303) · a predicted model of the same protein · chain A against A, TM-score 0.99
- P20606 · AlphaFold monomer V2.0 prediction for small copii coat GTPase SAR1 (P20606) · a predicted model of the same protein · chain B against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P15303
- Every structure of UniProt P40482
- Every structure of UniProt P20606
- Elsewhere: RCSB PDB 6GNI · PDBe 6GNI · UniProt P15303 · UniProt P40482 · UniProt P20606
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