Research workbench
AlphaFold monomer V2.0 prediction for holliday junction ATP-dependent DNA helicase ruvb (Q51426)
Analyse AlphaFold monomer V2.0 prediction for holliday junction ATP-dependent DNA… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q51426
- Type
- protein
- Length
- 352 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xEfa66a179B0bfB1956708792b71f4aa3D23c60e2
- Molecule
- Holliday junction ATP-dependent DNA helicase ruvb
- UniProt
- Q51426
- Pockets
- 2 · best druggability 0.69
Structure
1 distinct chain · 50% helix, 13% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Holliday junction ATP-dependent DNA helicase ruvb | protein | 352 | 50% helix, 13% strand | Q51426 |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 408 | 0.69 | 0.81 | 54 | empty |
| 2 | 140 | 0.39 | 0.73 | 21 | empty |
Compared structures
- 7X5B · Crystal structure of RuvB · an experimental structure of the same protein · chain A against A, TM-score 0.85
- 6BLB · 1.88 Angstrom Resolution Crystal Structure Holliday Junction ATP-dependent DNA Helicase… · an experimental structure of the same protein · chain A against A, TM-score 0.84
- 6BLB · 1.88 ångström resolution crystal structure holliday junction ATP- dependent DNA helicase… · an experimental structure of the same protein · chain A against A, TM-score 0.84
- 7X7P · CryoEM structure of dsDNA-RuvB-RuvA domain3 complex · an experimental structure of the same protein · chain A against O, TM-score 0.84
- 7X7Q · CryoEM structure of RuvA-RuvB-Holliday junction complex · an experimental structure of the same protein · chain A against O, TM-score 0.83
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q51426
- Elsewhere: UniProt Q51426 · AlphaFold DB Q51426
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