Research workbench
AlphaFold monomer V2.0 prediction for 40S ribosomal protein sa (Q8IJD4)
Analyse AlphaFold monomer V2.0 prediction for 40S ribosomal protein sa (Q8IJD4) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q8IJD4
- Type
- protein
- Length
- 263 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xD0337f9F0cD31B3005Bb291FE81bE29BE87fe0F8
- Molecule
- 40S ribosomal protein sa
- UniProt
- Q8IJD4
- Pockets
- 1 · best druggability 0.51
Structure
1 distinct chain · 36% helix, 11% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 40S ribosomal protein sa | protein | 263 | 36% helix, 11% strand | Q8IJD4 |
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 162 | 0.51 | 0.78 | 32 | empty |
Compared structures
- 3J7A · Cryo-EM structure of the plasmodium falciparum 80S ribosome bound to the anti-protozoan… · an experimental structure of the same protein · chain A against C, TM-score 0.73
- 3J7A · Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan… · an experimental structure of the same protein · chain A against C, TM-score 0.73
- 6OKK · Cryo-EM structure of the plasmodium falciparum 80S ribosome bound to the anti-protozoan… · an experimental structure of the same protein · chain A against C, TM-score 0.73
- 6OKK · Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan… · an experimental structure of the same protein · chain A against C, TM-score 0.73
- 3JBP · Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound… · an experimental structure of the same protein · chain A against C, TM-score 0.73
- 3JBO · Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound… · an experimental structure of the same protein · chain A against C, TM-score 0.72
- 8TPU · Subtomogram averaged consensus structure of the malarial 80S ribosome in Plasmodium… · an experimental structure of the same protein · chain A against SC, TM-score 0.72
- 3JBN · Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound… · an experimental structure of the same protein · chain A against C, TM-score 0.72
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8IJD4
- Elsewhere: UniProt Q8IJD4 · AlphaFold DB Q8IJD4
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