Research workbench
AlphaFold monomer V2.0 prediction for flagellar radial spoke protein 1 (Q27YU0)
Analyse AlphaFold monomer V2.0 prediction for flagellar radial spoke protein 1 (Q27YU0) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q27YU0
- Type
- protein
- Length
- 814 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x9B130d619fCFc21d0D08E5Ce38Cf42A5fbe230CB
- Molecule
- Flagellar radial spoke protein 1
- UniProt
- Q27YU0
- Pockets
- 15 · best druggability 0.78
Structure
1 distinct chain · 12% helix, 31% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Flagellar radial spoke protein 1 | protein | 814 | 12% helix, 31% strand | Q27YU0 |
Pockets
15 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 785 | 0.78 | 0.82 | 94 | empty |
| 2 | 398 | 0.62 | 0.77 | 59 | empty |
| 3 | 421 | 0.61 | 0.76 | 53 | empty |
| 4 | 316 | 0.54 | 0.75 | 45 | empty |
| 5 | 243 | 0.49 | 0.74 | 31 | empty |
Compared structures
- 7JTK · Radial spoke 1 isolated from chlamydomonas reinhardtii · an experimental structure of the same protein · chain A against A, TM-score 0.32
- 7JTK · Radial spoke 1 isolated from Chlamydomonas reinhardtii · an experimental structure of the same protein · chain A against A, TM-score 0.32
- 7JRJ · Chlamydomonas reinhardtii radial spoke head and neck (recombinant) · an experimental structure of the same protein · chain A against F, TM-score 0.25
- 7JRJ · Chlamydomonas reinhardtii radial spoke head and neck (recombinant) · an experimental structure of the same protein · chain A against F, TM-score 0.25
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q27YU0
- Elsewhere: UniProt Q27YU0 · AlphaFold DB Q27YU0
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.