Research workbench
AlphaFold monomer V2.0 prediction for ribosomal RNA small subunit methyltransferase a (Q3JVW6)
Analyse AlphaFold monomer V2.0 prediction for ribosomal RNA small subunit… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q3JVW6
- Type
- protein
- Length
- 275 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xB44F19a0cb161828322eEEd13F55d4C3C34938d2
- Molecule
- Ribosomal RNA small subunit methyltransferase a
- UniProt
- Q3JVW6
- Pockets
- 2 · best druggability 0.74
Structure
1 distinct chain · 40% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Ribosomal RNA small subunit methyltransferase a | protein | 275 | 40% helix, 21% strand | Q3JVW6 |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 167 | 0.74 | 0.91 | 38 | empty |
| 2 | 64 | 0.28 | 0.73 | 14 | empty |
Compared structures
- 3UZU · The structure of the Ribosomal RNA small subunit methyltransferase A from Burkholderia… · an experimental structure of the same protein · chain A against A, TM-score 0.91
- 3UZU · The structure of the ribosomal RNA small subunit methyltransferase a from burkholderia… · an experimental structure of the same protein · chain A against A, TM-score 0.91
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q3JVW6
- Elsewhere: UniProt Q3JVW6 · AlphaFold DB Q3JVW6
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