Research workbench
AlphaFold monomer V2.0 prediction for 30S ribosomal protein S4 (B7IA15)
Analyse AlphaFold monomer V2.0 prediction for 30S ribosomal protein S4 (B7IA15) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- B7IA15
- Type
- protein
- Length
- 208 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x6DAA77C4263E74E745cA9c4D8E291e57e8991Cf5
- Molecule
- 30S ribosomal protein S4
- UniProt
- B7IA15
- Pockets
- 2 · best druggability 0.60
Structure
1 distinct chain · 46% helix, 10% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 30S ribosomal protein S4 | protein | 208 | 46% helix, 10% strand | B7IA15 |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 110 | 0.60 | 0.86 | 21 | empty |
| 2 | 118 | 0.45 | 0.78 | 23 | empty |
Compared structures
- 7UVZ · A. baumannii ribosome-Streptothricin-D complex: 70S with E-site tRNA · an experimental structure of the same protein · chain A against d, TM-score 0.97
- 7M4U · A. baumannii Ribosome-Eravacycline complex: 30S · an experimental structure of the same protein · chain A against d, TM-score 0.97
- 7M4U · A. baumannii ribosome-eravacycline complex: 30S · an experimental structure of the same protein · chain A against d, TM-score 0.97
- 7M4W · A. baumannii Ribosome-Eravacycline complex: Empty 70S · an experimental structure of the same protein · chain A against d, TM-score 0.97
- 7M4Z · A. baumannii Ribosome-Eravacycline complex: hpf-bound 70S · an experimental structure of the same protein · chain A against d, TM-score 0.97
- 6V3E · Cryo-EM structure of the Acinetobacter baumannii Ribosome: 30S subunit · an experimental structure of the same protein · chain A against d, TM-score 0.96
- 7RYG · A. baumannii Ribosome-TP-6076 complex: E-site tRNA 70S · an experimental structure of the same protein · chain A against d, TM-score 0.96
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B7IA15
- Elsewhere: UniProt B7IA15 · AlphaFold DB B7IA15
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