Research workbench
AlphaFold monomer V2.0 prediction for DNA-directed RNA polymerase subunit L (Q8U4N1)
Analyse AlphaFold monomer V2.0 prediction for DNA-directed RNA polymerase subunit L… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q8U4N1
- Type
- protein
- Length
- 95 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xdbAF8966CCe723d803E73D904c686C788374F84D
- Molecule
- DNA-directed RNA polymerase subunit L
- UniProt
- Q8U4N1
- Pockets
- 1 · best druggability 0.31
Structure
1 distinct chain · 42% helix, 29% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | DNA-directed RNA polymerase subunit L | protein | 95 | 42% helix, 29% strand | Q8U4N1 |
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 51 | 0.31 | 0.75 | 12 | empty |
Compared structures
- 8RBO · Cryo-EM structure of Pyrococcus furiosus apo form RNA polymerase contracted clamp… · an experimental structure of the same protein · chain A against L, TM-score 0.98
- 8P2I · Cryo-EM structure of Pyrococcus furiosus apo form RNA polymerase contracted clamp… · an experimental structure of the same protein · chain A against L, TM-score 0.98
- 8CRO · Cryo-EM structure of Pyrococcus furiosus transcription elongation complex · an experimental structure of the same protein · chain A against L, TM-score 0.97
- 8ORQ · Cryo-EM structure of Pyrococcus furiosus apo form RNA polymerase open clamp conformation · an experimental structure of the same protein · chain A against L, TM-score 0.97
- 8OKI · Cryo-EM structure of Pyrococcus furiosus transcription elongation complex bound to Spt4/5 · an experimental structure of the same protein · chain A against L, TM-score 0.96
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8U4N1
- Elsewhere: UniProt Q8U4N1 · AlphaFold DB Q8U4N1
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