Research workbench
AlphaFold monomer V2.0 prediction for DNA-directed RNA polymerases II, IV and V subunit 8B (Q9M1A8)
Analyse AlphaFold monomer V2.0 prediction for DNA-directed RNA polymerases II, IV and V… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q9M1A8
- Type
- protein
- Length
- 146 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x5d1DBE1CCF2C7b8d1a0c0376A6169d8E6d6f2603
- Molecule
- DNA-directed RNA polymerases II, IV and V subunit 8B
- UniProt
- Q9M1A8
- Pockets
- 1 · best druggability 0.39
Structure
1 distinct chain · 5% helix, 47% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | DNA-directed RNA polymerases II, IV and V subunit 8B | protein | 146 | 5% helix, 47% strand | Q9M1A8 |
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 107 | 0.39 | 0.75 | 21 | empty |
Compared structures
- 7EU1 · The cryo-EM structure of a. thaliana pol IV-RDR2 holoenzyme · an experimental structure of the same protein · chain A against H, TM-score 0.86
- 7EU1 · The cryo-EM structure of A. thaliana Pol IV-RDR2 holoenzyme · an experimental structure of the same protein · chain A against H, TM-score 0.86
- 8XMC · Post-translocated Pol IV transcription elongation complex · an experimental structure of the same protein · chain A against H, TM-score 0.80
- 7EU0 · The cryo-EM structure of a. thaliana pol IV-RDR2 backtracked complex · an experimental structure of the same protein · chain A against H, TM-score 0.80
- 7EU0 · The cryo-EM structure of A. thaliana Pol IV-RDR2 backtracked complex · an experimental structure of the same protein · chain A against H, TM-score 0.80
- 8XMD · Pre-translocated Pol IV transcription elongation complex · an experimental structure of the same protein · chain A against H, TM-score 0.80
- 8XME · Backtracked Pol IV transcription elongation complex · an experimental structure of the same protein · chain A against H, TM-score 0.80
- 8XMB · NTP-bound Pol IV transcription elongation complex · an experimental structure of the same protein · chain A against H, TM-score 0.79
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9M1A8
- Elsewhere: UniProt Q9M1A8 · AlphaFold DB Q9M1A8
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