Research workbench
AlphaFold monomer V2.0 prediction for ribonuclease E (P21513)
Analyse AlphaFold monomer V2.0 prediction for ribonuclease E (P21513) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P21513
- Type
- protein
- Length
- 1,061 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x4Dff1DBB225A3491870Fd31Ec92D348E5c96AE0b
- Molecule
- Ribonuclease E
- UniProt
- P21513
- Pockets
- 5 · best druggability 0.80
Structure
1 distinct chain · 21% helix, 13% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Ribonuclease E | protein | 1061 | 21% helix, 13% strand | P21513 |
Pockets
5 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1007 | 0.80 | 0.81 | 105 | empty |
| 2 | 357 | 0.66 | 0.80 | 44 | empty |
| 3 | 166 | 0.51 | 0.78 | 24 | empty |
| 4 | 91 | 0.39 | 0.77 | 19 | empty |
| 5 | 51 | 0.31 | 0.76 | 15 | empty |
Compared structures
- 2BX2 · Catalytic domain of E. coli RNase E · an experimental structure of the same protein · chain A against L, TM-score 0.46
- 2BX2 · Catalytic domain of E. COLI RNase E · an experimental structure of the same protein · chain A against L, TM-score 0.46
- 6G63 · RNase E in complex with srna rrpa · an experimental structure of the same protein · chain A against N, TM-score 0.45
- 6G63 · RNase E in complex with sRNA RrpA · an experimental structure of the same protein · chain A against N, TM-score 0.45
- 2C4R · Catalytic domain of E. COLI RNase E · an experimental structure of the same protein · chain A against L, TM-score 0.45
- 2C4R · Catalytic domain of E. coli RNase E · an experimental structure of the same protein · chain A against L, TM-score 0.45
- 2C0B · Catalytic domain of E. coli RNase E in complex with 13-mer RNA · an experimental structure of the same protein · chain A against L, TM-score 0.45
- 2C0B · Catalytic domain of E. COLI RNase E in complex with 13-mer RNA · an experimental structure of the same protein · chain A against L, TM-score 0.45
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P21513
- Elsewhere: UniProt P21513 · AlphaFold DB P21513
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