Research workbench
AlphaFold monomer V2.0 prediction for ribosomal protein VAR1, mitochondrial (P02381)
Analyse AlphaFold monomer V2.0 prediction for ribosomal protein VAR1, mitochondrial… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P02381
- Type
- protein
- Length
- 398 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x22FA7Ab41F8BFe834C1fb0d9076152f2B55Fb9cA
- Molecule
- Ribosomal protein VAR1, mitochondrial
- UniProt
- P02381
- Pockets
- 7 · best druggability 0.62
Structure
1 distinct chain · 46% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Ribosomal protein VAR1, mitochondrial | protein | 398 | 46% helix, 18% strand | P02381 |
Pockets
7 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 425 | 0.62 | 0.76 | 33 | empty |
| 2 | 109 | 0.57 | 0.85 | 21 | empty |
| 3 | 98 | 0.42 | 0.78 | 22 | empty |
| 4 | 103 | 0.38 | 0.75 | 19 | empty |
| 5 | 102 | 0.36 | 0.74 | 18 | empty |
Compared structures
- 8OM3 · Small subunit of yeast mitochondrial ribosome in complex with IF3/Aim23. · an experimental structure of the same protein · chain A against C, TM-score 0.67
- 8OM4 · Small subunit of yeast mitochondrial ribosome. · an experimental structure of the same protein · chain A against C, TM-score 0.67
- 5MRF · Structure of the yeast mitochondrial ribosome - Class C · an experimental structure of the same protein · chain A against CC, TM-score 0.66
- 5MRC · Structure of the yeast mitochondrial ribosome - Class A · an experimental structure of the same protein · chain A against CC, TM-score 0.66
- 5MRE · Structure of the yeast mitochondrial ribosome - Class B · an experimental structure of the same protein · chain A against CC, TM-score 0.66
- 8OM2 · Small subunit of yeast mitochondrial ribosome in complex with METTL17/Rsm22. · an experimental structure of the same protein · chain A against C, TM-score 0.54
- 8D8K · Yeast mitochondrial small subunit assembly intermediate (State 2) · an experimental structure of the same protein · chain A against C, TM-score 0.45
- 8D8L · Yeast mitochondrial small subunit assembly intermediate (State 3) · an experimental structure of the same protein · chain A against C, TM-score 0.45
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P02381
- Elsewhere: UniProt P02381 · AlphaFold DB P02381
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