Research workbench
AlphaFold monomer V2.0 prediction for 50S ribosomal protein L2 (P9WHA5)
Analyse AlphaFold monomer V2.0 prediction for 50S ribosomal protein L2 (P9WHA5) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P9WHA5
- Type
- protein
- Length
- 280 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x94796168cFf9bD786025A738B85f21667861E30A
- Molecule
- 50S ribosomal protein L2
- UniProt
- P9WHA5
- Pockets
- 2 · best druggability 0.50
Structure
1 distinct chain · 9% helix, 29% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 50S ribosomal protein L2 | protein | 280 | 9% helix, 29% strand | P9WHA5 |
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 187 | 0.50 | 0.77 | 22 | empty |
| 2 | 103 | 0.34 | 0.73 | 18 | empty |
Compared structures
- 7MT7 · Mtb 70S with P and E site tRNAs · an experimental structure of the same protein · chain A against C, TM-score 0.97
- 7KGB · CryoEM structure of A2296-methylated Mycobacterium tuberculosis ribosome bound with SEQ-9 · an experimental structure of the same protein · chain A against C, TM-score 0.97
- 7MSM · Mtb 70SIC in complex with MtbEttA at Trans_R0 state · an experimental structure of the same protein · chain A against C, TM-score 0.97
- 7MSC · Mtb 70SIC in complex with MtbEttA at Pre_R0 state · an experimental structure of the same protein · chain A against C, TM-score 0.97
- 7MT2 · Mtb 70S initiation complex · an experimental structure of the same protein · chain A against C, TM-score 0.97
- 7MT3 · Mtb 70S with P/E tRNA · an experimental structure of the same protein · chain A against C, TM-score 0.97
- 7MSZ · Mtb 70SIC in complex with MtbEttA at Trans_R1 state · an experimental structure of the same protein · chain A against C, TM-score 0.97
- 7MSH · Mtb 70SIC in complex with MtbEttA at Pre_R1 state · an experimental structure of the same protein · chain A against C, TM-score 0.97
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P9WHA5
- Elsewhere: UniProt P9WHA5 · AlphaFold DB P9WHA5
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