Research workbench
AlphaFold monomer V2.0 prediction for 50S ribosomal protein L2 (Q9RXJ9)
Analyse AlphaFold monomer V2.0 prediction for 50S ribosomal protein L2 (Q9RXJ9) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q9RXJ9
- Type
- protein
- Length
- 275 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xd1A2963012bEcbC7A8f505464439Ab678C48936f
- Molecule
- 50S ribosomal protein L2
- UniProt
- Q9RXJ9
- Pockets
- 2 · best druggability 0.52
Structure
1 distinct chain · 9% helix, 28% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 50S ribosomal protein L2 | protein | 275 | 9% helix, 28% strand | Q9RXJ9 |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 223 | 0.52 | 0.76 | 22 | empty |
| 2 | 63 | 0.30 | 0.75 | 16 | empty |
Compared structures
- 5DM6 · Crystal structure of the 50S ribosomal subunit from deinococcus radiodurans · an experimental structure of the same protein · chain A against A, TM-score 0.99
- 5DM7 · Crystal structure of the 50S ribosomal subunit from deinococcus radiodurans in complex… · an experimental structure of the same protein · chain A against A, TM-score 0.98
- 5DM7 · Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans in complex… · an experimental structure of the same protein · chain A against A, TM-score 0.98
- 7A0R · 50S Deinococcus radiodurans ribosome bounded with mycinamicin I · an experimental structure of the same protein · chain A against A, TM-score 0.97
- 7A0R · 50S deinococcus radiodurans ribosome bounded with mycinamicin I · an experimental structure of the same protein · chain A against A, TM-score 0.97
- 7A18 · 50S deinococcus radiodurans ribosome bounded with mycinamicin IV · an experimental structure of the same protein · chain A against A, TM-score 0.97
- 7A0S · 50S deinococcus radiodurans ribosome bounded with mycinamicin I · an experimental structure of the same protein · chain A against A, TM-score 0.96
- 5JVG · The large ribosomal subunit from deinococcus radiodurans in complex with avilamycin · an experimental structure of the same protein · chain A against A, TM-score 0.96
- 4WFN · Crystal structure of the large ribosomal subunit (50S) of deinococcus radiodurans… · an experimental structure of the same protein · chain A against A, TM-score 0.92
- 4U67 · Crystal structure of the large ribosomal subunit (50S) of Deinococcus radiodurans… · an experimental structure of the same protein · chain A against A, TM-score 0.92
- 4U67 · Crystal structure of the large ribosomal subunit (50S) of deinococcus radiodurans… · an experimental structure of the same protein · chain A against A, TM-score 0.92
- 5JVH · The crystal structure large ribosomal subunit (50S) of Deinococcus radiodurans in complex… · an experimental structure of the same protein · chain A against A, TM-score 0.92
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9RXJ9
- Elsewhere: UniProt Q9RXJ9 · AlphaFold DB Q9RXJ9
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