Research workbench
AlphaFold monomer V2.0 prediction for 60S ribosomal protein L2-a (P0CX45)
Analyse AlphaFold monomer V2.0 prediction for 60S ribosomal protein L2-a (P0CX45) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P0CX45
- Type
- protein
- Length
- 254 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x5a181f8DcC204E6eA2Da8066d42059b6b014062E
- Molecule
- 60S ribosomal protein L2-a
- UniProt
- P0CX45
- Pockets
- 1 · best druggability 0.32
Structure
1 distinct chain · 9% helix, 25% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 60S ribosomal protein L2-a | protein | 254 | 9% helix, 25% strand | P0CX45 |
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 81 | 0.32 | 0.74 | 26 | empty |
Compared structures
- 8CIV · Translocation intermediate 5 (TI-5) of 80S S. cerevisiae ribosome with ligands and eEF2… · an experimental structure of the same protein · chain A against EE, TM-score 0.98
- 8CDR · Translocation intermediate 2 (TI-2) of 80S S. cerevisiae ribosome with ligands and eEF2… · an experimental structure of the same protein · chain A against EE, TM-score 0.98
- 8CEH · Translocation intermediate 4 (TI-4) of 80S S. cerevisiae ribosome with ligands and eEF2… · an experimental structure of the same protein · chain A against EE, TM-score 0.98
- 8CGN · Non-rotated 80S S. cerevisiae ribosome with ligands · an experimental structure of the same protein · chain A against EE, TM-score 0.98
- 7AZY · Context-specific inhibition of eukaryotic translation by macrolide antibiotics · an experimental structure of the same protein · chain A against x, TM-score 0.98
- 8CG8 · Translocation intermediate 3 (TI-3) of 80S S. cerevisiae ribosome with ligands and eEF2… · an experimental structure of the same protein · chain A against EE, TM-score 0.98
- 6S47 · Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1 · an experimental structure of the same protein · chain A against AD, TM-score 0.98
- 6Q8Y · Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease… · an experimental structure of the same protein · chain A against AW, TM-score 0.98
- 8CDL · 80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complex · an experimental structure of the same protein · chain A against EE, TM-score 0.98
- 6TB3 · yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complex · an experimental structure of the same protein · chain A against AW, TM-score 0.98
- 8CCS · 80S S. cerevisiae ribosome with ligands in hybrid-1 pre-translocation (PRE-H1) complex · an experimental structure of the same protein · chain A against EE, TM-score 0.98
- 9F9S · Yeast SDD1 Disome with Mbf1 · an experimental structure of the same protein · chain A against Mw, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0CX45
- Elsewhere: UniProt P0CX45 · AlphaFold DB P0CX45
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