Research workbench
AlphaFold monomer V2.0 prediction for ribosome-inactivating protein 3 (P25891)
Analyse AlphaFold monomer V2.0 prediction for ribosome-inactivating protein 3 (P25891) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P25891
- Type
- protein
- Length
- 300 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x15FB92c459c9F7763B8429dBFDDcE1186F36F75c
- Molecule
- Ribosome-inactivating protein 3
- UniProt
- P25891
- Pockets
- 3 · best druggability 0.68
Structure
1 distinct chain · 40% helix, 13% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Ribosome-inactivating protein 3 | protein | 300 | 40% helix, 13% strand | P25891 |
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 416 | 0.68 | 0.81 | 39 | empty |
| 2 | 85 | 0.39 | 0.77 | 21 | empty |
| 3 | 71 | 0.34 | 0.76 | 14 | empty |
Compared structures
- 2PQG · Crystal structure of inactive ribosome inactivating protein from maize (B-32) · an experimental structure of the same protein · chain A against A, TM-score 0.85
- 2PQG · Crystal structure of inactive ribosome inactivating protein from maize (b-32) · an experimental structure of the same protein · chain A against A, TM-score 0.85
- 2PQI · Crystal structure of active ribosome inactivating protein from maize (B-32) · an experimental structure of the same protein · chain A against A, TM-score 0.78
- 2PQI · Crystal structure of active ribosome inactivating protein from maize (b-32) · an experimental structure of the same protein · chain A against A, TM-score 0.78
- 2PQJ · Crystal structure of active ribosome inactivating protein from maize (B-32), complex with… · an experimental structure of the same protein · chain A against A, TM-score 0.77
- 2PQJ · Crystal structure of active ribosome inactivating protein from maize (b-32), complex with… · an experimental structure of the same protein · chain A against A, TM-score 0.77
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P25891
- Elsewhere: UniProt P25891 · AlphaFold DB P25891
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