Research workbench
AlphaFold monomer V2.0 prediction for synembryn-a (Q5E9J8)
Analyse AlphaFold monomer V2.0 prediction for synembryn-a (Q5E9J8) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q5E9J8
- Type
- protein
- Length
- 530 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x714B37d4C8086b323D16Bb517466D864d4A312bA
- Molecule
- Synembryn-a
- UniProt
- Q5E9J8
- Pockets
- 4 · best druggability 0.40
Structure
1 distinct chain · 63% helix, 3% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Synembryn-a | protein | 530 | 63% helix, 3% strand | Q5E9J8 |
Pockets
4 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 55 | 0.40 | 0.81 | 18 | empty |
| 2 | 61 | 0.36 | 0.79 | 13 | empty |
| 3 | 110 | 0.35 | 0.73 | 19 | empty |
| 4 | 50 | 0.27 | 0.74 | 12 | empty |
Compared structures
- 6N85 · Resistance to inhibitors of cholinesterase 8A (RIC8A) protein in complex with mbp-tagged… · an experimental structure of the same protein · chain A against B, TM-score 0.75
- 6N85 · Resistance to inhibitors of cholinesterase 8A (Ric8A) protein in complex with MBP-tagged… · an experimental structure of the same protein · chain A against B, TM-score 0.75
- 6N86 · Resistance to inhibitors of cholinesterase 8A (RIC8A) protein · an experimental structure of the same protein · chain A against B, TM-score 0.75
- 6N86 · Resistance to inhibitors of cholinesterase 8A (Ric8A) protein · an experimental structure of the same protein · chain A against B, TM-score 0.75
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5E9J8
- Elsewhere: UniProt Q5E9J8 · AlphaFold DB Q5E9J8
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