Research workbench
AlphaFold monomer V2.0 prediction for riboflavin biosynthesis protein ribd (P25539)
Analyse AlphaFold monomer V2.0 prediction for riboflavin biosynthesis protein ribd… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P25539
- Type
- protein
- Length
- 367 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x661f92Fc5950020C7aB410B5F5b9a3f429F49Ae5
- Molecule
- Riboflavin biosynthesis protein ribd
- UniProt
- P25539
- Pockets
- 4 · best druggability 0.74
Structure
1 distinct chain · 31% helix, 25% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Riboflavin biosynthesis protein ribd | protein | 367 | 31% helix, 25% strand | P25539 |
Pockets
4 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 531 | 0.74 | 0.82 | 62 | empty |
| 2 | 296 | 0.64 | 0.81 | 31 | empty |
| 3 | 164 | 0.62 | 0.84 | 29 | empty |
| 4 | 93 | 0.36 | 0.74 | 14 | empty |
Compared structures
- 2G6V · The crystal structure of ribD from Escherichia coli · an experimental structure of the same protein · chain A against B, TM-score 0.93
- 2G6V · The crystal structure of ribd from escherichia COLI · an experimental structure of the same protein · chain A against B, TM-score 0.93
- 2OBC · The crystal structure of ribd from escherichia COLI in complex with a substrate analogue… · an experimental structure of the same protein · chain A against B, TM-score 0.93
- 2OBC · The crystal structure of RibD from Escherichia coli in complex with a substrate analogue… · an experimental structure of the same protein · chain A against B, TM-score 0.93
- 2O7P · The crystal structure of RibD from Escherichia coli in complex with the oxidised NADP+… · an experimental structure of the same protein · chain A against A, TM-score 0.92
- 2O7P · The crystal structure of ribd from escherichia COLI in complex with the oxidised NADP+… · an experimental structure of the same protein · chain A against A, TM-score 0.92
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P25539
- Elsewhere: UniProt P25539 · AlphaFold DB P25539
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