Research workbench
AlphaFold monomer V2.0 prediction for L-rhamnose isomerase (Q9KCL9)
Analyse AlphaFold monomer V2.0 prediction for L-rhamnose isomerase (Q9KCL9) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q9KCL9
- Type
- protein
- Length
- 418 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xB44F19a0cb161828322eEEd13F55d4C3C34938d2
- Molecule
- L-rhamnose isomerase
- UniProt
- Q9KCL9
- Pockets
- 6 · best druggability 0.72
Structure
1 distinct chain · 47% helix, 12% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | L-rhamnose isomerase | protein | 418 | 47% helix, 12% strand | Q9KCL9 |
Pockets
6 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 57 | 0.72 | 0.99 | 18 | empty |
| 2 | 152 | 0.50 | 0.79 | 29 | empty |
| 3 | 88 | 0.42 | 0.78 | 25 | empty |
| 4 | 107 | 0.40 | 0.76 | 17 | empty |
| 5 | 52 | 0.36 | 0.79 | 16 | empty |
Compared structures
- 3UVA · Crystal structure of L-rhamnose isomerase mutant W38F from Bacillus halodurans in complex… · an experimental structure of the same protein · chain A against C, TM-score 0.97
- 3UVA · Crystal structure of L-rhamnose isomerase mutant W38F from bacillus halodurans in complex… · an experimental structure of the same protein · chain A against C, TM-score 0.97
- 3UXI · Crystal structure of L-rhamnose isomerase W38A mutant from Bacillus halodurans · an experimental structure of the same protein · chain A against C, TM-score 0.96
- 3UXI · Crystal structure of L-rhamnose isomerase W38A mutant from bacillus halodurans · an experimental structure of the same protein · chain A against C, TM-score 0.96
- 3UU0 · Crystal structure of L-rhamnose isomerase from Bacillus halodurans in complex with Mn · an experimental structure of the same protein · chain A against D, TM-score 0.96
- 3UU0 · Crystal structure of L-rhamnose isomerase from bacillus halodurans in complex with mn · an experimental structure of the same protein · chain A against D, TM-score 0.96
- 3P14 · Crystal structure of L-rhamnose isomerase with a novel high thermo- stability from… · an experimental structure of the same protein · chain A against B, TM-score 0.96
- 3P14 · Crystal structure of L-rhamnose isomerase with a novel high thermo-stability from… · an experimental structure of the same protein · chain A against B, TM-score 0.96
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9KCL9
- Elsewhere: UniProt Q9KCL9 · AlphaFold DB Q9KCL9
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.