MolNFT v1 · #74585 · protein
Crystal structure of L-rhamnose isomerase with a novel high thermo- stability from bacillus halodurans
3P14: “Crystal structure of L-rhamnose isomerase with a novel high thermo- stability from bacillus halodurans”. X-ray diffraction, 20 pockets (best druggability 0.65). MolNFT v1 #74585 on GenesisL1: 3D structure, binding sites and pockets…
- PDB
- 3P14
- Type
- protein
- Length
- 1,608 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- L-rhamnose isomerase
- EC
- 5.3.1.14
- UniProt
- Q9KCL9
- Pockets
- 20 · best druggability 0.65
Structure
x-ray diffraction · 4 distinct chains · 48% helix, 12% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | L-rhamnose isomerase (EC 5.3.1.14) | protein | 402 | 48% helix, 12% strand | Q9KCL9 |
| B | L-rhamnose isomerase (EC 5.3.1.14) | protein | 403 | 49% helix, 12% strand | Q9KCL9 |
| C | L-rhamnose isomerase (EC 5.3.1.14) | protein | 402 | 48% helix, 12% strand | Q9KCL9 |
| D | L-rhamnose isomerase (EC 5.3.1.14) | protein | 401 | 47% helix, 11% strand | Q9KCL9 |
Pockets
20 pockets found on a 1 Å grid, 12 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 374 | 0.65 | 0.79 | 59 | empty |
| 2 | 321 | 0.63 | 0.79 | 56 | empty |
| 3 | 320 | 0.61 | 0.78 | 52 | empty |
| 4 | 289 | 0.60 | 0.79 | 48 | empty |
| 5 | 262 | 0.60 | 0.79 | 41 | empty |
Interfaces
3 interfaces between chains.
- A–C · 2548 Ų buried · 33 hydrogen bonds · protein-protein
- B–D · 2527 Ų buried · 31 hydrogen bonds · protein-protein
- A–B · 281 Ų buried · 4 hydrogen bonds · protein-protein
Compared structures
- 3P14 · Crystal structure of L-rhamnose isomerase with a novel high thermo-stability from… · the same entry in another collection · chain D against D, TM-score 1.00
- Q9KCL9 · AlphaFold monomer V2.0 prediction for L-rhamnose isomerase (Q9KCL9) · a predicted model of the same protein · chain C against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9KCL9
- Elsewhere: RCSB PDB 3P14 · PDBe 3P14 · UniProt Q9KCL9
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