Research workbench
AlphaFold monomer V2.0 prediction for replication factor C subunit 3 (P38629)
Analyse AlphaFold monomer V2.0 prediction for replication factor C subunit 3 (P38629) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P38629
- Type
- protein
- Length
- 340 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x80D2ac0F5e3268bC5C1d28BBAA07E3169BB02b79
- Molecule
- Replication factor C subunit 3
- UniProt
- P38629
- Pockets
- 2 · best druggability 0.70
Structure
1 distinct chain · 64% helix, 9% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Replication factor C subunit 3 | protein | 340 | 64% helix, 9% strand | P38629 |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 149 | 0.70 | 0.89 | 25 | empty |
| 2 | 143 | 0.47 | 0.77 | 18 | empty |
Compared structures
- 7THJ · Structure of the yeast clamp loader (replication factor C rfc) bound to the sliding clamp… · an experimental structure of the same protein · chain A against C, TM-score 0.92
- 7TIC · Structure of the yeast clamp loader (replication factor C rfc) bound to the sliding clamp… · an experimental structure of the same protein · chain A against C, TM-score 0.92
- 7THV · Structure of the yeast clamp loader (replication factor C rfc) bound to the sliding clamp… · an experimental structure of the same protein · chain A against C, TM-score 0.91
- 1SXJ · Crystal structure of the eukaryotic clamp loader (replication factor C, rfc) bound to the… · an experimental structure of the same protein · chain A against C, TM-score 0.91
- 1SXJ · Crystal Structure of the Eukaryotic Clamp Loader (Replication Factor C, RFC) Bound to the… · an experimental structure of the same protein · chain A against C, TM-score 0.91
- 8THC · Structure of the Saccharomyces cerevisiae clamp unloader Elg1-RFC bound to a cracked PCNA · an experimental structure of the same protein · chain A against C, TM-score 0.90
- 8THB · Structure of the Saccharomyces cerevisiae PCNA clamp unloader Elg1-RFC complex · an experimental structure of the same protein · chain A against C, TM-score 0.90
- 7STB · Closed state of RAD24-RFC:9-1-1 bound to a 5' SS/DSDNA junction · an experimental structure of the same protein · chain A against C, TM-score 0.90
- 7U19 · RFC:PCNA bound to nicked DNA · an experimental structure of the same protein · chain A against C, TM-score 0.90
- 7U1P · RFC:PCNA bound to DNA with a ssdna gap of five nucleotides · an experimental structure of the same protein · chain A against C, TM-score 0.90
- 7TI8 · Structure of the yeast clamp loader (replication factor C rfc) bound to the open sliding… · an experimental structure of the same protein · chain A against C, TM-score 0.89
- 8DQX · Open state of RFC:PCNA bound to a 3' SS/DSDNA junction · an experimental structure of the same protein · chain A against C, TM-score 0.89
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P38629
- Elsewhere: UniProt P38629 · AlphaFold DB P38629
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