Research workbench
AlphaFold monomer V2.0 prediction for ATP-dependent recd-like DNA helicase (Q9RT63)
Analyse AlphaFold monomer V2.0 prediction for ATP-dependent recd-like DNA helicase… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q9RT63
- Type
- protein
- Length
- 715 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x0D671490EE06E75975e90D7F99F73B20BE618744
- Molecule
- ATP-dependent recd-like DNA helicase
- UniProt
- Q9RT63
- Pockets
- 10 · best druggability 0.59
Structure
1 distinct chain · 42% helix, 22% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | ATP-dependent recd-like DNA helicase | protein | 715 | 42% helix, 22% strand | Q9RT63 |
Pockets
10 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 210 | 0.59 | 0.81 | 32 | empty |
| 2 | 270 | 0.55 | 0.77 | 30 | empty |
| 3 | 175 | 0.52 | 0.78 | 25 | empty |
| 4 | 250 | 0.51 | 0.75 | 37 | empty |
| 5 | 81 | 0.51 | 0.84 | 20 | empty |
Compared structures
- 3GP8 · Crystal structure of the binary complex of RECD2 with DNA · an experimental structure of the same protein · chain A against A, TM-score 0.76
- 3GP8 · Crystal structure of the binary complex of RecD2 with DNA · an experimental structure of the same protein · chain A against A, TM-score 0.76
- 3E1S · Structure of an N-terminal truncation of deinococcus radiodurans RECD2 · an experimental structure of the same protein · chain A against A, TM-score 0.71
- 3E1S · Structure of an N-terminal truncation of Deinococcus radiodurans RecD2 · an experimental structure of the same protein · chain A against A, TM-score 0.71
- 3GPL · Crystal structure of the ternary complex of RecD2 with DNA and ADPNP · an experimental structure of the same protein · chain A against A, TM-score 0.66
- 3GPL · Crystal structure of the ternary complex of RECD2 with DNA and adpnp · an experimental structure of the same protein · chain A against A, TM-score 0.66
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9RT63
- Elsewhere: UniProt Q9RT63 · AlphaFold DB Q9RT63
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