MolNFT v1 · #61975 · protein

Structure of an N-terminal truncation of deinococcus radiodurans RECD2

3E1S · Exodeoxyribonuclease V, subunit recd: “Structure of an N-terminal truncation of deinococcus radiodurans RECD2”. X-ray diffraction, 6 pockets (best druggability 0.70). MolNFT v1 #61975 on GenesisL1: 3D structure, binding sites and…

PDB: 3E1S
Type: protein
Length: 517 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Exodeoxyribonuclease V, subunit recd
UniProt: Q9RT63
Pockets: 6 · best druggability 0.70

Structure

x-ray diffraction · 1 distinct chain · 41% helix, 19% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Exodeoxyribonuclease V, subunit recd	protein	517	41% helix, 19% strand	Q9RT63

Pockets

6 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	751	0.70	0.77	78	empty
2	281	0.65	0.82	31	empty
3	152	0.48	0.78	22	empty
4	81	0.37	0.76	20	empty
5	85	0.37	0.76	13	empty

Compared structures

3E1S · Structure of an N-terminal truncation of Deinococcus radiodurans RecD2 · the same entry in another collection · chain A against A, TM-score 1.00
Q9RT63 · AlphaFold monomer V2.0 prediction for ATP-dependent recd-like DNA helicase (Q9RT63) · a predicted model of the same protein · chain A against A, TM-score 0.97

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9RT63
Elsewhere: RCSB PDB 3E1S · PDBe 3E1S · UniProt Q9RT63

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