Research workbench
AlphaFold monomer V2.0 prediction for pentatricopeptide repeat domain-containing protein 3, mitochondrial (Q96EY7)
Analyse AlphaFold monomer V2.0 prediction for pentatricopeptide repeat… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q96EY7
- Type
- protein
- Length
- 689 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x5c4adF1416281C09AE8eE1cbb80fF7e44cE86F97
- Molecule
- Pentatricopeptide repeat domain-containing protein 3, mitochondrial
- UniProt
- Q96EY7
- Pockets
- 5 · best druggability 0.71
Structure
1 distinct chain · 57% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Pentatricopeptide repeat domain-containing protein 3, mitochondrial | protein | 689 | 57% helix, 0% strand | Q96EY7 |
Pockets
5 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 733 | 0.71 | 0.78 | 70 | empty |
| 2 | 138 | 0.45 | 0.77 | 25 | empty |
| 3 | 117 | 0.45 | 0.78 | 17 | empty |
| 4 | 168 | 0.42 | 0.73 | 23 | empty |
| 5 | 57 | 0.37 | 0.79 | 17 | empty |
Compared structures
- 8K2A · Cryo-EM structure of the human 55S mitoribosome with Tigecycline · an experimental structure of the same protein · chain A against So, TM-score 0.89
- 8XT2 · Cryo-EM structure of the human 55S mitoribosome with 10uM Tigecycline · an experimental structure of the same protein · chain A against So, TM-score 0.89
- 8XT0 · Cryo-EM structure of the human 55S mitoribosome with 5um Tigecycline · an experimental structure of the same protein · chain A against So, TM-score 0.89
- 8ANY · Human mitochondrial ribosome in complex with LRPPRC, SLIRP, A-site, P-site, E-site tRNAs… · an experimental structure of the same protein · chain A against A4, TM-score 0.84
- 7PO3 · Human mitochondrial ribosome small subunit · an experimental structure of the same protein · chain A against 4, TM-score 0.84
- 7PO2 · Initiation complex of human mitochondrial ribosome small subunit with IF2, fMet-tRNAMet… · an experimental structure of the same protein · chain A against 4, TM-score 0.84
- 7P2E · Human mitochondrial ribosome small subunit in complex with IF3, GMPPMP and streptomycin · an experimental structure of the same protein · chain A against 4, TM-score 0.84
- 7PO1 · Initiation complex of human mitochondrial ribosome small subunit with IF3 · an experimental structure of the same protein · chain A against 4, TM-score 0.84
- 7PNZ · Assembly intermediate of human mitochondrial ribosome small subunit without mS37 in… · an experimental structure of the same protein · chain A against 4, TM-score 0.84
- 7PNY · Assembly intermediate of human mitochondrial ribosome small subunit without mS37 in… · an experimental structure of the same protein · chain A against 4, TM-score 0.84
- 7PO0 · Assembly intermediate of human mitochondrial ribosome small subunit without mS37 in… · an experimental structure of the same protein · chain A against 4, TM-score 0.84
- 7PNX · Assembly intermediate of human mitochondrial ribosome small subunit without mS37 in… · an experimental structure of the same protein · chain A against 4, TM-score 0.84
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q96EY7
- Elsewhere: UniProt Q96EY7 · AlphaFold DB Q96EY7
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