Research workbench
AlphaFold monomer V2.0 prediction for photosystem II CP47 reaction center protein (P05429)
Analyse AlphaFold monomer V2.0 prediction for photosystem II CP47 reaction center… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P05429
- Type
- protein
- Length
- 507 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xCa362f979B89bC75244B26182ebf222b19Bf0036
- Molecule
- Photosystem II CP47 reaction center protein
- UniProt
- P05429
- Pockets
- 10 · best druggability 0.58
Structure
1 distinct chain · 49% helix, 10% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Photosystem II CP47 reaction center protein | protein | 507 | 49% helix, 10% strand | P05429 |
Pockets
10 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 405 | 0.58 | 0.74 | 43 | empty |
| 2 | 129 | 0.56 | 0.83 | 20 | empty |
| 3 | 156 | 0.56 | 0.81 | 22 | empty |
| 4 | 55 | 0.54 | 0.88 | 24 | empty |
| 5 | 112 | 0.42 | 0.76 | 19 | empty |
Compared structures
- 7N8O · High-resolution structure of photosystem II from the mesophilic cyanobacterium… · an experimental structure of the same protein · chain A against B, TM-score 0.99
- 7RCV · High-resolution structure of photosystem II from the mesophilic cyanobacterium… · an experimental structure of the same protein · chain A against B, TM-score 0.99
- 7RCV · High-resolution structure of photosystem II from the mesophilic cyanobacterium… · an experimental structure of the same protein · chain A against B, TM-score 0.99
- 6WJ6 · Cryo-EM structure of apo-photosystem II from synechocystis sp. pcc 6803 · an experimental structure of the same protein · chain A against B, TM-score 0.94
- 6WJ6 · Cryo-EM structure of apo-Photosystem II from Synechocystis sp. PCC 6803 · an experimental structure of the same protein · chain A against B, TM-score 0.94
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P05429
- Elsewhere: UniProt P05429 · AlphaFold DB P05429
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