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AlphaFold monomer V2.0 prediction for photosystem II protein D1 2 (A5A8K9)

Analyse AlphaFold monomer V2.0 prediction for photosystem II protein D1 2 (A5A8K9) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

Accession: A5A8K9
Type: protein
Length: 360 residues
Chains: 1
Collection: MolNFT v1 / AlphaFold
Contract: 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
Owner: 0xaCAaE32D8E5EFccE18B7F469F2E9Bf2D1cC6c8c3
Molecule: Photosystem II protein D1 2
UniProt: A5A8K9
Pockets: 4 · best druggability 0.69

Structure

1 distinct chain · 58% helix, 3% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Photosystem II protein D1 2	protein	360	58% helix, 3% strand	A5A8K9

Pockets

4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	620	0.69	0.78	76	empty
2	77	0.66	0.91	17	empty
3	177	0.47	0.75	24	empty
4	53	0.27	0.73	14	empty

Compared structures

7YMM · PSII-Pcb Tetramer of Acaryochloris Marina · an experimental structure of the same protein · chain A against 3A, TM-score 0.78
7YMI · PSII-Pcb Dimer of Acaryochloris Marina · an experimental structure of the same protein · chain A against A, TM-score 0.78

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A5A8K9
Elsewhere: UniProt A5A8K9 · AlphaFold DB A5A8K9

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