UniProt A5A8K9
Photosystem II protein D1 2 (A5A8K9)
Photosystem II protein D1 2 (UniProt A5A8K9), EC 1.10.3.9: 2 experimental structures and 1 predicted model on GenesisL1, 10 ligands bound, 13 pockets. Binding sites, druggability and experiment against prediction (TM-score) in…
- UniProt
- A5A8K9
- Protein
- Photosystem II protein D1 2
- EC
- 1.10.3.9
- Experimental structures
- 2
- Predicted models
- 1
- Ligands
- 10
- Pockets
- 13 · 2 records with a druggable one
Structures
3 records of A5A8K9 in the MolNFT archive: 2 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 7YMI | PSII-Pcb Dimer of Acaryochloris Marina | electron microscopy | A, a | CL7, PHO, 8CT, SQD, LHG, LMG | — |
| 7YMM | PSII-Pcb Tetramer of Acaryochloris Marina | electron microscopy | 1A, 2A, 3A, 4A | CL7, PHO, 8CT, LMG, SQD, LHG | 9 (best 0.84) |
| A5A8K9 | AlphaFold monomer V2.0 prediction for photosystem II protein D1 2 (A5A8K9) | predicted | A | — | 4 (best 0.69) |
Ligands
- 8CT · (6'R,11cis,11'cis,13cis,15cis)-4',5'-didehydro-5',6'-dihydro-beta,beta-carotene · in 2 records
- BCT · Bicarbonate ion · in 2 records
- CL7 · Chlorophyll D · in 2 records
- DGD · Digalactosyl diacyl glycerol (dgdg) · in 2 records
- FE2 · Fe (II) ion · in 2 records
- LHG · 1,2-dipalmitoyl-phosphatidyl-glycerole · in 2 records
- LMG · 1,2-distearoyl-monogalactosyl-diglyceride · in 2 records
- PHO · Pheophytin A · in 2 records
- PL9 · 2,3-dimethyl-5-(3,7,11,15,19,23,27,31,35-nonamethyl-2, 6,10,14,18,22,26,30,34-hexatriacontanonaenyl-2,5-cyclohexadiene-1,4-dione-2,3-dimethyl-5-solanesyl-1,4-benzoquinone · in 2 records
- SQD · 1,2-di-O-acyl-3-O-[6-deoxy-6-sulfo-alpha-D-glucopyranosyl]-sn-glycerol · in 2 records
Experiment against prediction
- 7YMM chain 3A against the predicted model A5A8K9: TM-score 0.99, RMSD 0.76 Å
- 7YMM chain 1A against the predicted model A5A8K9: TM-score 0.99, RMSD 0.76 Å
- 7YMM chain 2A against the predicted model A5A8K9: TM-score 0.99, RMSD 0.76 Å
- 7YMM chain 4A against the predicted model A5A8K9: TM-score 0.99, RMSD 0.76 Å
- 7YMI chain A against the predicted model A5A8K9: TM-score 0.99, RMSD 0.76 Å
Elsewhere
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