Research workbench
AlphaFold monomer V2.0 prediction for photosystem I P700 chlorophyll a apoprotein A1 (P29254)
Analyse AlphaFold monomer V2.0 prediction for photosystem I P700 chlorophyll a… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P29254
- Type
- protein
- Length
- 751 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x4d07E6a23DeB6B95bd9b90EcB67368b7e8D3B77e
- Molecule
- Photosystem I P700 chlorophyll a apoprotein A1
- UniProt
- P29254
- Pockets
- 9 · best druggability 0.70
Structure
1 distinct chain · 61% helix, 5% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Photosystem I P700 chlorophyll a apoprotein A1 | protein | 751 | 61% helix, 5% strand | P29254 |
Pockets
9 pockets found on a 1 Å grid, 6 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 864 | 0.70 | 0.75 | 76 | empty |
| 2 | 704 | 0.70 | 0.77 | 66 | empty |
| 3 | 415 | 0.58 | 0.74 | 46 | empty |
| 4 | 326 | 0.57 | 0.75 | 43 | empty |
| 5 | 229 | 0.53 | 0.76 | 27 | empty |
Compared structures
- 5OY0 · Structure of synechocystis photosystem I trimer at 2.5A resolution · an experimental structure of the same protein · chain A against 1, TM-score 0.98
- 8AM5 · RCII/PSI complex, class 3 · an experimental structure of the same protein · chain A against a, TM-score 0.98
- 8ASP · RCII/PSI complex, focused refinement of PSI · an experimental structure of the same protein · chain A against a, TM-score 0.98
- 6HQB · Monomeric cyanobacterial photosystem I · an experimental structure of the same protein · chain A against A, TM-score 0.98
- 6HQB · Monomeric cyanobacterial photosystem I · an experimental structure of the same protein · chain A against A, TM-score 0.98
- 6UZV · The structure of a red shifted photosystem I complex · an experimental structure of the same protein · chain A against A, TM-score 0.98
- 7O1V · Structure of a minimal photosystem I · an experimental structure of the same protein · chain A against A, TM-score 0.97
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P29254
- Elsewhere: UniProt P29254 · AlphaFold DB P29254
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