Research workbench
AlphaFold monomer V2.0 prediction for proteasome subunit alpha 1 (Q53080)
Analyse AlphaFold monomer V2.0 prediction for proteasome subunit alpha 1 (Q53080) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q53080
- Type
- protein
- Length
- 259 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xd10960F956646DE8b64d3598984c91C2d5Af3D7b
- Molecule
- Proteasome subunit alpha 1
- UniProt
- Q53080
- Pockets
- 3 · best druggability 0.33
Structure
1 distinct chain · 36% helix, 22% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Proteasome subunit alpha 1 | protein | 259 | 36% helix, 22% strand | Q53080 |
Pockets
3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 53 | 0.33 | 0.78 | 18 | empty |
| 2 | 55 | 0.29 | 0.75 | 16 | empty |
| 3 | 50 | 0.25 | 0.73 | 13 | empty |
Compared structures
- 1Q5Q · The Rhodococcus 20S proteasome · an experimental structure of the same protein · chain A against A, TM-score 0.84
- 1Q5Q · The rhodococcus 20S proteasome · an experimental structure of the same protein · chain A against A, TM-score 0.84
- 1Q5R · The Rhodococcus 20S proteasome with unprocessed pro-peptides · an experimental structure of the same protein · chain A against A, TM-score 0.84
- 1Q5R · The rhodococcus 20S proteasome with unprocessed pro-peptides · an experimental structure of the same protein · chain A against A, TM-score 0.84
- 2H6J · Crystal Structure of the Beta F145A Rhodococcus Proteasome · an experimental structure of the same protein · chain A against A, TM-score 0.84
- 2H6J · Crystal structure of the beta F145A rhodococcus proteasome · an experimental structure of the same protein · chain A against A, TM-score 0.84
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q53080
- Elsewhere: UniProt Q53080 · AlphaFold DB Q53080
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