Research workbench
AlphaFold monomer V2.0 prediction for proteasome subunit alpha type-1 (P18420)
Analyse AlphaFold monomer V2.0 prediction for proteasome subunit alpha type-1 (P18420) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P18420
- Type
- protein
- Length
- 263 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xE4dDdE4F6dA9c2bAf0CCF2Ea7ebF1b7DF4f1421e
- Molecule
- Proteasome subunit alpha type-1
- UniProt
- P18420
- Pockets
- 1 · best druggability 0.32
Structure
1 distinct chain · 32% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Proteasome subunit alpha type-1 | protein | 263 | 32% helix, 23% strand | P18420 |
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 73 | 0.32 | 0.74 | 16 | empty |
Compared structures
- 6TU3 · Rat 20S proteasome · an experimental structure of the same protein · chain A against T, TM-score 0.88
- 6TU3 · Rat 20S proteasome · an experimental structure of the same protein · chain A against F, TM-score 0.88
- 6EPE · Substrate processing state 26S proteasome (SPS2) · an experimental structure of the same protein · chain A against F, TM-score 0.87
- 6EPE · Substrate processing state 26S proteasome (SPS2) · an experimental structure of the same protein · chain A against F, TM-score 0.87
- 6EPC · Ground state 26S proteasome (GS2) · an experimental structure of the same protein · chain A against F, TM-score 0.86
- 6EPC · Ground state 26S proteasome (GS2) · an experimental structure of the same protein · chain A against F, TM-score 0.86
- 6EPF · Ground state 26S proteasome (GS1) · an experimental structure of the same protein · chain A against F, TM-score 0.86
- 6EPF · Ground state 26S proteasome (GS1) · an experimental structure of the same protein · chain A against F, TM-score 0.86
- 6EPD · Substrate processing state 26S proteasome (SPS1) · an experimental structure of the same protein · chain A against F, TM-score 0.84
- 6EPD · Substrate processing state 26S proteasome (SPS1) · an experimental structure of the same protein · chain A against F, TM-score 0.84
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P18420
- Elsewhere: UniProt P18420 · AlphaFold DB P18420
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