Research workbench
AlphaFold monomer V2.0 prediction for pre-mRNA-processing factor 19 (Q9UMS4)
Analyse AlphaFold monomer V2.0 prediction for pre-mRNA-processing factor 19 (Q9UMS4) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q9UMS4
- Type
- protein
- Length
- 504 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x9B130d619fCFc21d0D08E5Ce38Cf42A5fbe230CB
- Molecule
- Pre-mRNA-processing factor 19
- UniProt
- Q9UMS4
- Pockets
- 3 · best druggability 0.80
Structure
1 distinct chain · 22% helix, 33% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Pre-mRNA-processing factor 19 | protein | 504 | 22% helix, 33% strand | Q9UMS4 |
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 793 | 0.80 | 0.84 | 65 | empty |
| 2 | 308 | 0.58 | 0.77 | 33 | empty |
| 3 | 85 | 0.39 | 0.77 | 20 | empty |
Compared structures
- 4LG8 · Crystal structure of PRPF19 WD40 repeats · an experimental structure of the same protein · chain A against A, TM-score 0.61
- 4LG8 · Crystal structure of PRPF19 WD40 repeats · an experimental structure of the same protein · chain A against A, TM-score 0.61
- 5YZG · The Cryo-EM Structure of Human Catalytic Step I Spliceosome (C complex) at 4.1 angstrom… · an experimental structure of the same protein · chain A against s, TM-score 0.61
- 8C6J · Human spliceosomal PM5 C* complex · an experimental structure of the same protein · chain A against v, TM-score 0.24
- 9FMD · Integrative model of the human post-catalytic spliceosome (P-complex) · an experimental structure of the same protein · chain A against s, TM-score 0.24
- 8RO2 · Integrative Structure of the human intron lariat Spliceosome (ILS'') · an experimental structure of the same protein · chain A against s, TM-score 0.24
- 8I0V · The cryo-EM structure of human post-Bact complex · an experimental structure of the same protein · chain A against r, TM-score 0.24
- 8I0W · The cryo-EM structure of human C complex · an experimental structure of the same protein · chain A against r, TM-score 0.24
- 8I0U · The cryo-EM structure of human Bact-IV complex · an experimental structure of the same protein · chain A against r, TM-score 0.24
- 7W59 · The cryo-EM structure of human pre-C*-I complex · an experimental structure of the same protein · chain A against r, TM-score 0.24
- 7W59 · The cryo-EM structure of human pre-C*-I complex · an experimental structure of the same protein · chain A against r, TM-score 0.24
- 7W5B · The cryo-EM structure of human C* complex · an experimental structure of the same protein · chain A against r, TM-score 0.24
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9UMS4
- Elsewhere: UniProt Q9UMS4 · AlphaFold DB Q9UMS4
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