Research workbench
AlphaFold monomer V2.0 prediction for phospholipase D1 (Q13393)
Analyse AlphaFold monomer V2.0 prediction for phospholipase D1 (Q13393) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q13393
- Type
- protein
- Length
- 1,074 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xedc07A86dE46108e804E3E81e5b0cAF1692Cf5cF
- Molecule
- Phospholipase D1
- UniProt
- Q13393
- Pockets
- 15 · best druggability 0.80
Structure
1 distinct chain · 30% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Phospholipase D1 | protein | 1074 | 30% helix, 19% strand | Q13393 |
Pockets
15 pockets found on a 1 Å grid, 8 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1058 | 0.80 | 0.81 | 84 | empty |
| 2 | 143 | 0.74 | 0.92 | 38 | empty |
| 3 | 516 | 0.66 | 0.77 | 66 | empty |
| 4 | 592 | 0.66 | 0.76 | 53 | empty |
| 5 | 393 | 0.63 | 0.77 | 29 | empty |
Compared structures
- 6OHR · Structure of compound 5 bound human Phospholipase D1 catalytic domain · an experimental structure of the same protein · chain A against A, TM-score 0.53
- 6OHR · Structure of compound 5 bound human phospholipase D1 catalytic domain · an experimental structure of the same protein · chain A against A, TM-score 0.53
- 6U8Z · Crystal Structure of Catalytic Domain of Human Phospholipase D1 · an experimental structure of the same protein · chain A against A, TM-score 0.52
- 6U8Z · Crystal structure of catalytic domain of human phospholipase D1 · an experimental structure of the same protein · chain A against A, TM-score 0.52
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q13393
- Elsewhere: UniProt Q13393 · AlphaFold DB Q13393
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