Research workbench
AlphaFold monomer V2.0 prediction for ATP-dependent DNA helicase pcra (P56255)
Analyse AlphaFold monomer V2.0 prediction for ATP-dependent DNA helicase pcra (P56255) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P56255
- Type
- protein
- Length
- 724 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x0D3f973941DB9ad80F3A1541fe23482e820dc1DD
- Molecule
- ATP-dependent DNA helicase pcra
- UniProt
- P56255
- Pockets
- 7 · best druggability 0.81
Structure
1 distinct chain · 52% helix, 15% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | ATP-dependent DNA helicase pcra | protein | 724 | 52% helix, 15% strand | P56255 |
Pockets
7 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 727 | 0.81 | 0.85 | 86 | empty |
| 2 | 680 | 0.72 | 0.79 | 50 | empty |
| 3 | 173 | 0.52 | 0.79 | 28 | empty |
| 4 | 127 | 0.46 | 0.78 | 21 | empty |
| 5 | 123 | 0.46 | 0.78 | 19 | empty |
Compared structures
- 3PJR · Helicase substrate complex · an experimental structure of the same protein · chain A against A, TM-score 0.85
- 3PJR · Helicase substrate complex · an experimental structure of the same protein · chain A against A, TM-score 0.85
- 2PJR · Helicase product complex · an experimental structure of the same protein · chain A against A, TM-score 0.74
- 2PJR · Helicase product complex · an experimental structure of the same protein · chain A against A, TM-score 0.74
- 1QHG · Structure of DNA helicase mutant with adpnp · an experimental structure of the same protein · chain A against A, TM-score 0.65
- 1QHG · Structure of DNA helicase mutant with adpnp · an experimental structure of the same protein · chain A against A, TM-score 0.65
- 1PJR · Structure of DNA helicase · an experimental structure of the same protein · chain A against A, TM-score 0.65
- 1PJR · Structure of DNA helicase · an experimental structure of the same protein · chain A against A, TM-score 0.65
- 1QHH · Structure of DNA helicase with adpnp · an experimental structure of the same protein · chain A against B, TM-score 0.30
- 1QHH · Structure of DNA helicase with adpnp · an experimental structure of the same protein · chain A against B, TM-score 0.30
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P56255
- Elsewhere: UniProt P56255 · AlphaFold DB P56255
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