Research workbench
AlphaFold monomer V2.0 prediction for outer membrane usher protein papc (P07110)
Analyse AlphaFold monomer V2.0 prediction for outer membrane usher protein papc (P07110) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P07110
- Type
- protein
- Length
- 836 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x2E12bb69d787D5a5875B6782fa9a2a1b39dc1D02
- Molecule
- Outer membrane usher protein papc
- UniProt
- P07110
- Pockets
- 10 · best druggability 0.84
Structure
1 distinct chain · 8% helix, 56% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Outer membrane usher protein papc | protein | 836 | 8% helix, 56% strand | P07110 |
Pockets
10 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1114 | 0.84 | 0.86 | 114 | empty |
| 2 | 73 | 0.73 | 0.98 | 25 | empty |
| 3 | 227 | 0.68 | 0.86 | 60 | empty |
| 4 | 197 | 0.54 | 0.79 | 32 | empty |
| 5 | 55 | 0.52 | 0.88 | 16 | empty |
Modifications
Observed in the structure: 2 disulfide (disulfide).
Compared structures
- 2VQI · Structure of the P pilus usher (papc) translocation pore · an experimental structure of the same protein · chain A against B, TM-score 0.56
- 2VQI · Structure of the P pilus usher (PapC) translocation pore · an experimental structure of the same protein · chain A against B, TM-score 0.56
- 3FIP · Crystal structure of Usher PapC translocation pore · an experimental structure of the same protein · chain A against A, TM-score 0.51
- 3FIP · Crystal structure of usher papc translocation pore · an experimental structure of the same protein · chain A against A, TM-score 0.51
- 2KT6 · Structural homology between the C-terminal domain of the papc usher and its plug · an experimental structure of the same protein · chain A against A, TM-score 0.10
- 2KT6 · Structural homology between the C-terminal domain of the PapC usher and its plug · an experimental structure of the same protein · chain A against A, TM-score 0.10
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P07110
- Elsewhere: UniProt P07110 · AlphaFold DB P07110
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.