MolNFT v1 · #63735 · protein

Crystal structure of usher papc translocation pore

3FIP · Outer membrane usher protein papc: “Crystal structure of usher papc translocation pore”. X-ray diffraction, 10 pockets (best druggability 0.82). MolNFT v1 #63735 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 3FIP
Type: protein
Length: 820 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Outer membrane usher protein papc
UniProt: P07110
Pockets: 10 · best druggability 0.82

Structure

x-ray diffraction · 2 distinct chains · 2% helix, 60% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Outer membrane usher protein papc	protein	436	2% helix, 63% strand	P07110
B	Outer membrane usher protein papc	protein	384	2% helix, 56% strand	P07110

Pockets

10 pockets found on a 1 Å grid, 7 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	1191	0.82	0.83	166	empty
2	975	0.72	0.76	104	empty
3	98	0.69	0.93	26	empty
4	335	0.69	0.83	41	empty
5	255	0.55	0.77	48	empty

Interfaces

1 interface between chains.

A–B · 416 Å² buried · 9 hydrogen bonds · protein-protein

Compared structures

3FIP · Crystal structure of Usher PapC translocation pore · the same entry in another collection · chain A against A, TM-score 1.00
P07110 · AlphaFold monomer V2.0 prediction for outer membrane usher protein papc (P07110) · a predicted model of the same protein · chain A against A, TM-score 0.97

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P07110
Elsewhere: RCSB PDB 3FIP · PDBe 3FIP · UniProt P07110

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