Research workbench
AlphaFold monomer V2.0 prediction for polyadenylate-binding protein 3 (Q9H361)
Analyse AlphaFold monomer V2.0 prediction for polyadenylate-binding protein 3 (Q9H361) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q9H361
- Type
- protein
- Length
- 631 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xdF09c3F332366D4f87E251F22999238F0D0c0d4B
- Molecule
- Polyadenylate-binding protein 3
- UniProt
- Q9H361
- Pockets
- 3 · best druggability 0.73
Structure
1 distinct chain · 35% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Polyadenylate-binding protein 3 | protein | 631 | 35% helix, 19% strand | Q9H361 |
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1004 | 0.73 | 0.76 | 87 | empty |
| 2 | 104 | 0.44 | 0.78 | 22 | empty |
| 3 | 83 | 0.34 | 0.74 | 16 | empty |
Compared structures
- 2D9P · Solution structure of RNA binding domain 4 in polyadenylation binding protein 3 · an experimental structure of the same protein · chain A against A, TM-score 0.14
- 2D9P · Solution structure of RNA binding domain 4 in Polyadenylation binding protein 3 · an experimental structure of the same protein · chain A against A, TM-score 0.14
- 4IVE · Crystal structure of a polyadenylate-binding protein 3 (PABPC3) from homo sapiens at 2.30… · an experimental structure of the same protein · chain A against C, TM-score 0.12
- 4IVE · Crystal structure of a polyadenylate-binding protein 3 (PABPC3) from Homo sapiens at 2.30… · an experimental structure of the same protein · chain A against C, TM-score 0.12
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9H361
- Elsewhere: UniProt Q9H361 · AlphaFold DB Q9H361
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