MolNFT v1 · #34225 · protein

Solution structure of RNA binding domain 4 in polyadenylation binding protein 3

2D9P · Polyadenylate-binding protein 3: “Solution structure of RNA binding domain 4 in polyadenylation binding protein 3”. Solution nmr, 1 pocket (best druggability 0.31). MolNFT v1 #34225 on GenesisL1: 3D structure, binding sites and…

PDB: 2D9P
Type: protein
Length: 103 residues
Chains: 1
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Polyadenylate-binding protein 3
UniProt: Q9H361
Pockets: 1 · best druggability 0.31

Structure

solution nmr · 1 distinct chain · 17% helix, 26% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Polyadenylate-binding protein 3	protein	103	17% helix, 26% strand	Q9H361

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	53	0.31	0.76	13	empty

Compared structures

2D9P · Solution structure of RNA binding domain 4 in Polyadenylation binding protein 3 · the same entry in another collection · chain A against A, TM-score 1.00
Q9H361 · AlphaFold monomer V2.0 prediction for polyadenylate-binding protein 3 (Q9H361) · a predicted model of the same protein · chain A against A, TM-score 0.73

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9H361
Elsewhere: RCSB PDB 2D9P · PDBe 2D9P · UniProt Q9H361

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