Research workbench

AlphaFold monomer V2.0 prediction for ornithine aminotransferase (Q07805)

Analyse AlphaFold monomer V2.0 prediction for ornithine aminotransferase (Q07805) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

Accession: Q07805
Type: protein
Length: 414 residues
Chains: 1
Collection: MolNFT v1 / AlphaFold
Contract: 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
Owner: 0xEa58c7534E5701aA8370E0fAEb19b7e14653e69c
Molecule: Ornithine aminotransferase
UniProt: Q07805
Pockets: 3 · best druggability 0.60

Structure

1 distinct chain · 40% helix, 17% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Ornithine aminotransferase	protein	414	40% helix, 17% strand	Q07805

Pockets

3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	358	0.60	0.77	44	empty
2	267	0.53	0.75	31	empty
3	128	0.44	0.77	27	empty

Compared structures

3LG0 · Structure of Plasmodium falciparum ornithine delta-aminotransferase · an experimental structure of the same protein · chain A against D, TM-score 0.92
3LG0 · Structure of plasmodium falciparum ornithine delta-aminotransferase · an experimental structure of the same protein · chain A against D, TM-score 0.92

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q07805
Elsewhere: UniProt Q07805 · AlphaFold DB Q07805

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