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AlphaFold monomer V2.0 prediction for nuclear pore complex protein NUP85 (Q9BW27)

Analyse AlphaFold monomer V2.0 prediction for nuclear pore complex protein NUP85… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

Accession: Q9BW27
Type: protein
Length: 656 residues
Chains: 1
Collection: MolNFT v1 / AlphaFold
Contract: 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
Owner: 0x9188600a0FCa2914254C94299b1bd9721Bc4D500
Molecule: Nuclear pore complex protein NUP85
UniProt: Q9BW27
Pockets: 4 · best druggability 0.54

Structure

1 distinct chain · 67% helix, 1% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Nuclear pore complex protein NUP85	protein	656	67% helix, 1% strand	Q9BW27

Pockets

4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	156	0.54	0.80	25	empty
2	71	0.52	0.85	18	empty
3	91	0.34	0.74	19	empty
4	84	0.32	0.73	11	empty

Compared structures

7R5J · Human nuclear pore complex (dilated) · an experimental structure of the same protein · chain A against P1, TM-score 0.91
7R5K · Human nuclear pore complex (constricted) · an experimental structure of the same protein · chain A against P3, TM-score 0.91
7PEQ · Model of the outer rings of the human nuclear pore complex · an experimental structure of the same protein · chain A against AH, TM-score 0.63

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9BW27
Elsewhere: UniProt Q9BW27 · AlphaFold DB Q9BW27

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