Research workbench
AlphaFold monomer V2.0 prediction for nucleoside diphosphate-linked moiety X motif 6 (P53370)
Analyse AlphaFold monomer V2.0 prediction for nucleoside diphosphate-linked moiety X… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P53370
- Type
- protein
- Length
- 316 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x1e8bBDc10263b0a8A5AB66eBFd6808b4E7635cA2
- Molecule
- Nucleoside diphosphate-linked moiety X motif 6
- UniProt
- P53370
- Pockets
- 2 · best druggability 0.63
Structure
1 distinct chain · 26% helix, 30% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Nucleoside diphosphate-linked moiety X motif 6 | protein | 316 | 26% helix, 30% strand | P53370 |
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 385 | 0.63 | 0.78 | 41 | empty |
| 2 | 152 | 0.58 | 0.82 | 20 | empty |
Compared structures
- 3H95 · Crystal structure of the nudix domain of NUDT6 · an experimental structure of the same protein · chain A against A, TM-score 0.48
- 3H95 · Crystal structure of the NUDIX domain of NUDT6 · an experimental structure of the same protein · chain A against A, TM-score 0.48
- 3FXT · Crystal structure of the N-terminal domain of human NUDT6 · an experimental structure of the same protein · chain A against A, TM-score 0.27
- 3FXT · Crystal structure of the N-terminal domain of human NUDT6 · an experimental structure of the same protein · chain A against A, TM-score 0.27
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P53370
- Elsewhere: UniProt P53370 · AlphaFold DB P53370
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