Research workbench
AlphaFold monomer V2.0 prediction for NEDD8 ultimate buster 1 (Q9Y5A7)
Analyse AlphaFold monomer V2.0 prediction for NEDD8 ultimate buster 1 (Q9Y5A7) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q9Y5A7
- Type
- protein
- Length
- 615 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xd91633319BDB0a92cbC4f08DeA734Bf74C030064
- Molecule
- NEDD8 ultimate buster 1
- UniProt
- Q9Y5A7
- Pockets
- 12 · best druggability 0.75
Structure
1 distinct chain · 60% helix, 5% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | NEDD8 ultimate buster 1 | protein | 615 | 60% helix, 5% strand | Q9Y5A7 |
Pockets
12 pockets found on a 1 Å grid, 7 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 586 | 0.75 | 0.81 | 55 | empty |
| 2 | 744 | 0.70 | 0.77 | 51 | empty |
| 3 | 475 | 0.70 | 0.81 | 36 | empty |
| 4 | 236 | 0.67 | 0.84 | 24 | empty |
| 5 | 223 | 0.56 | 0.78 | 36 | empty |
Compared structures
- 9E8L · Nub1/Fat10-processing human 26S proteasome bound to Txnl1 with Rpt4 at top of spiral… · an experimental structure of the same protein · chain A against g, TM-score 0.15
- 8USD · Rpn1/Nub1UBL-focused alignment of the non-substrate-engaged human 26S proteasome · an experimental structure of the same protein · chain A against g, TM-score 0.15
- 8USC · Nub1/Fat10-processing human 26S proteasome · an experimental structure of the same protein · chain A against g, TM-score 0.15
- 9E8N · Nub1/Fat10-processing human 26S proteasome bound to Txnl1 with Rpt3 at top of spiral… · an experimental structure of the same protein · chain A against g, TM-score 0.15
- 9E8G · Nub1/Fat10-processing human 26S proteasome bound to Txnl1 with Rpt5 at top of spiral… · an experimental structure of the same protein · chain A against g, TM-score 0.14
- 9E8H · Human proteasome in resting state conformation bound to TXNL1 in backward conformation · an experimental structure of the same protein · chain A against g, TM-score 0.14
- 8USB · Non-substrate-engaged human 26S proteasome with Nub1/FAT10 bound to Rpn1 · an experimental structure of the same protein · chain A against g, TM-score 0.14
- 9E8I · Human proteasome in resting state conformation bound to TXNL1 in Forward conformation · an experimental structure of the same protein · chain A against g, TM-score 0.14
- 9E8J · Nub1/Fat10-processing human 26S proteasome bound to Txnl1 with Rpt1 at top of spiral… · an experimental structure of the same protein · chain A against g, TM-score 0.14
- 1WJU · Solution structure of N-terminal ubiquitin-like domain of human NEDD8 ultimate buster-1 · an experimental structure of the same protein · chain A against A, TM-score 0.13
- 1WJU · Solution structure of N-terminal ubiquitin-like domain of human NEDD8 ultimate buster-1 · an experimental structure of the same protein · chain A against A, TM-score 0.13
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9Y5A7
- Elsewhere: UniProt Q9Y5A7 · AlphaFold DB Q9Y5A7
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