Research workbench
AlphaFold monomer V2.0 prediction for NAD(P)H-quinone oxidoreductase chain 4 1 (Q8DKY0)
Analyse AlphaFold monomer V2.0 prediction for NAD(P)H-quinone oxidoreductase chain 4 1… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q8DKY0
- Type
- protein
- Length
- 529 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x9F605311B7e26e76340423EfAfbE5e2EFc7A0b7C
- Molecule
- NAD(P)H-quinone oxidoreductase chain 4 1
- UniProt
- Q8DKY0
- Pockets
- 3 · best druggability 0.48
Structure
1 distinct chain · 73% helix, 4% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | NAD(P)H-quinone oxidoreductase chain 4 1 | protein | 529 | 73% helix, 4% strand | Q8DKY0 |
Pockets
3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 143 | 0.48 | 0.77 | 15 | empty |
| 2 | 146 | 0.48 | 0.78 | 29 | empty |
| 3 | 67 | 0.46 | 0.83 | 15 | empty |
Compared structures
- 6KHJ · Supercomplex for electron transfer · an experimental structure of the same protein · chain A against D, TM-score 0.95
- 6KHJ · Supercomplex for electron transfer · an experimental structure of the same protein · chain A against D, TM-score 0.95
- 6KHI · Supercomplex for cylic electron transport in cyanobacteria · an experimental structure of the same protein · chain A against D, TM-score 0.95
- 6KHI · Supercomplex for cylic electron transport in cyanobacteria · an experimental structure of the same protein · chain A against D, TM-score 0.95
- 6NBQ · T.elongatus NDH (data-set 1) · an experimental structure of the same protein · chain A against D, TM-score 0.94
- 6NBQ · T.ELONGATUS ndh (data-set 1) · an experimental structure of the same protein · chain A against D, TM-score 0.94
- 6NBY · T.ELONGATUS ndh (composite model) · an experimental structure of the same protein · chain A against D, TM-score 0.94
- 6NBY · T.elongatus NDH (composite model) · an experimental structure of the same protein · chain A against D, TM-score 0.94
- 6NBX · T.elongatus NDH (data-set 2) · an experimental structure of the same protein · chain A against D, TM-score 0.94
- 6NBX · T.ELONGATUS ndh (data-set 2) · an experimental structure of the same protein · chain A against D, TM-score 0.94
- 6L7O · cryo-EM structure of cyanobacteria Fd-NDH-1L complex · an experimental structure of the same protein · chain A against D, TM-score 0.93
- 6L7O · Cryo-EM structure of cyanobacteria fd-ndh-1L complex · an experimental structure of the same protein · chain A against D, TM-score 0.93
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8DKY0
- Elsewhere: UniProt Q8DKY0 · AlphaFold DB Q8DKY0
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