MolNFT v2 · #158915 · protein
T.elongatus NDH (data-set 2)
6NBX: “T.elongatus NDH (data-set 2)”. Electron microscopy at 3.5, 1 ligand (SF4). MolNFT v2 #158915 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6NBX
- Type
- protein
- Length
- 3,854 residues
- Chains
- 18
- Method
- electron microscopy
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 3.5
- Source
- Thermosynechococcus elongatus (strain BP-1)
- UniProt
- Q8DL32, Q8DMR6, Q8DJ02, Q8DKY0, Q8DL29, Q8DKX9, Q8DL30, Q8DJD9, Q8DL31, Q8DJ01, Q8DKZ4, Q8DKZ3, Q8DLN5, Q8DJU2, Q8DMU4, V5V507, Q8DL61
- Ligands
- SF4
Structure
electron microscopy · resolution 3.5 · 18 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 335 | — | Q8DL32 |
| B | — | protein | 483 | — | Q8DMR6 |
| C | — | protein | 100 | — | Q8DJ02 |
| D | — | protein | 504 | — | Q8DKY0 |
| E | — | protein | 101 | — | Q8DL29 |
| F | — | protein | 655 | — | Q8DKX9 |
| G | — | protein | 191 | — | Q8DL30 |
| H | — | protein | 392 | — | Q8DJD9 |
| I | — | protein | 184 | — | Q8DL31 |
| J | — | protein | 161 | — | Q8DJ01 |
| K | — | protein | 212 | — | Q8DKZ4 |
| L | — | protein | 66 | — | Q8DKZ3 |
| M | — | protein | 111 | — | Q8DLN5 |
| N | — | protein | 148 | — | Q8DJU2 |
| O | — | protein | 69 | — | Q8DMU4 |
| P | — | protein | 42 | — | V5V507 |
| Q | — | protein | 43 | — | — |
| S | — | protein | 57 | — | Q8DL61 |
Ligands and binding sites
- SF4 · Iron/sulfur cluster · ligand · 3 copies · chains I, H, K
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6NBX · T.ELONGATUS ndh (data-set 2) · the same entry in another collection · chain K against K, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8DL32
- Every structure of UniProt Q8DMR6
- Every structure of UniProt Q8DJ02
- Every structure of UniProt Q8DKY0
- Every structure of UniProt Q8DL29
- Every structure of UniProt Q8DKX9
- Every structure of UniProt Q8DL30
- Every structure of UniProt Q8DJD9
- Every structure of UniProt Q8DL31
- Every structure of UniProt Q8DJ01
- Every structure of UniProt Q8DKZ4
- Every structure of UniProt Q8DKZ3
- Every structure of UniProt Q8DLN5
- Every structure of UniProt Q8DJU2
- Every structure of UniProt Q8DMU4
- Every structure of UniProt V5V507
- Every structure of UniProt Q8DL61
- Elsewhere: RCSB PDB 6NBX · PDBe 6NBX · UniProt Q8DL32 · UniProt Q8DMR6 · UniProt Q8DJ02 · UniProt Q8DKY0 · UniProt Q8DL29 · UniProt Q8DKX9 · UniProt Q8DL30 · UniProt Q8DJD9 · UniProt Q8DL31 · UniProt Q8DJ01 · UniProt Q8DKZ4 · UniProt Q8DKZ3 · UniProt Q8DLN5 · UniProt Q8DJU2 · UniProt Q8DMU4 · UniProt V5V507 · UniProt Q8DL61
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