Research workbench
AlphaFold monomer V2.0 prediction for NAD(P)H-quinone oxidoreductase subunit 2 (Q8DMR6)
Analyse AlphaFold monomer V2.0 prediction for NAD(P)H-quinone oxidoreductase subunit 2… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q8DMR6
- Type
- protein
- Length
- 515 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x97265405D6859EE2a3BD1Ed52eC900D81e668aDa
- Molecule
- NAD(P)H-quinone oxidoreductase subunit 2
- UniProt
- Q8DMR6
- Pockets
- 3 · best druggability 0.56
Structure
1 distinct chain · 79% helix, 2% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | NAD(P)H-quinone oxidoreductase subunit 2 | protein | 515 | 79% helix, 2% strand | Q8DMR6 |
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 240 | 0.56 | 0.77 | 29 | empty |
| 2 | 98 | 0.37 | 0.75 | 19 | empty |
| 3 | 81 | 0.34 | 0.75 | 19 | empty |
Compared structures
- 6KHI · Supercomplex for cylic electron transport in cyanobacteria · an experimental structure of the same protein · chain A against B, TM-score 0.95
- 6KHI · Supercomplex for cylic electron transport in cyanobacteria · an experimental structure of the same protein · chain A against B, TM-score 0.95
- 6KHJ · Supercomplex for electron transfer · an experimental structure of the same protein · chain A against B, TM-score 0.94
- 6KHJ · Supercomplex for electron transfer · an experimental structure of the same protein · chain A against B, TM-score 0.94
- 6L7O · Cryo-EM structure of cyanobacteria fd-ndh-1L complex · an experimental structure of the same protein · chain A against B, TM-score 0.93
- 6L7O · cryo-EM structure of cyanobacteria Fd-NDH-1L complex · an experimental structure of the same protein · chain A against B, TM-score 0.93
- 6L7P · cryo-EM structure of cyanobacteria NDH-1LdelV complex · an experimental structure of the same protein · chain A against B, TM-score 0.93
- 6L7P · Cryo-EM structure of cyanobacteria ndh-1LDELV complex · an experimental structure of the same protein · chain A against B, TM-score 0.93
- 6NBY · T.elongatus NDH (composite model) · an experimental structure of the same protein · chain A against B, TM-score 0.93
- 6NBY · T.ELONGATUS ndh (composite model) · an experimental structure of the same protein · chain A against B, TM-score 0.93
- 6NBQ · T.ELONGATUS ndh (data-set 1) · an experimental structure of the same protein · chain A against B, TM-score 0.93
- 6NBQ · T.elongatus NDH (data-set 1) · an experimental structure of the same protein · chain A against B, TM-score 0.93
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8DMR6
- Elsewhere: UniProt Q8DMR6 · AlphaFold DB Q8DMR6
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