MolNFT v1 · #155442 · protein
Cryo-EM structure of cyanobacteria ndh-1LDELV complex
6L7P: “Cryo-EM structure of cyanobacteria ndh-1LDELV complex”. Electron microscopy, 7 ligands (AJP, LHG, SQD). MolNFT v1 #155442 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6L7P
- Type
- protein
- Length
- 3,896 residues
- Chains
- 18
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q8DL32, Q8DMR6, Q8DJ02, Q8DKY0, Q8DL29, Q8DKX9, Q8DL30, Q8DJD9, Q8DL31, Q8DJ01, Q8DKZ4, Q8DKZ3, Q8DLN5, Q8DJU2, Q8DMU4, Q8DL61
- Ligands
- AJP, LHG, SQD, BCR, SF4, DGD, PQN
Structure
electron microscopy · 18 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 365 | — | Q8DL32 |
| B | — | protein | 492 | — | Q8DMR6 |
| C | — | protein | 121 | — | Q8DJ02 |
| D | — | protein | 504 | — | Q8DKY0 |
| E | — | protein | 101 | — | Q8DL29 |
| F | — | protein | 646 | — | Q8DKX9 |
| G | — | protein | 191 | — | Q8DL30 |
| H | — | protein | 393 | — | Q8DJD9 |
| I | — | protein | 189 | — | Q8DL31 |
| J | — | protein | 156 | — | Q8DJ01 |
| K | — | protein | 200 | — | Q8DKZ4 |
| L | — | protein | 73 | — | Q8DKZ3 |
| M | — | protein | 110 | — | Q8DLN5 |
| N | — | protein | 148 | — | Q8DJU2 |
| O | — | protein | 67 | — | Q8DMU4 |
| P | — | protein | 41 | — | — |
| Q | — | protein | 44 | — | — |
| S | — | protein | 55 | — | Q8DL61 |
Ligands and binding sites
- AJP · Digitonin · ligand · 44 copies · chains A, B, D, C, F, I, P, Q, G, E
- LHG · 1,2-dipalmitoyl-phosphatidyl-glycerole · ligand · 9 copies · chains A, H, I, C, G, B, D, F, P
- SQD · 1,2-di-O-acyl-3-O-[6-deoxy-6-sulfo-alpha-D-glucopyranosyl]-sn-glycerol · ligand · 4 copies · chains D, F, Q, B, A, K, L, N
- BCR · Beta-carotene · ligand · 3 copies · chains A, I, L, D, F, P, Q
- SF4 · Iron/sulfur cluster · ligand · 3 copies · chains I, H, K
- DGD · Digalactosyl diacyl glycerol (dgdg) · ligand · 2 copies · chains A, C, L
- PQN · Phylloquinone · ligand · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6L7P · cryo-EM structure of cyanobacteria NDH-1LdelV complex · the same entry in another collection · chain K against K, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8DL32
- Every structure of UniProt Q8DMR6
- Every structure of UniProt Q8DJ02
- Every structure of UniProt Q8DKY0
- Every structure of UniProt Q8DL29
- Every structure of UniProt Q8DKX9
- Every structure of UniProt Q8DL30
- Every structure of UniProt Q8DJD9
- Every structure of UniProt Q8DL31
- Every structure of UniProt Q8DJ01
- Every structure of UniProt Q8DKZ4
- Every structure of UniProt Q8DKZ3
- Every structure of UniProt Q8DLN5
- Every structure of UniProt Q8DJU2
- Every structure of UniProt Q8DMU4
- Every structure of UniProt Q8DL61
- Elsewhere: RCSB PDB 6L7P · PDBe 6L7P · UniProt Q8DL32 · UniProt Q8DMR6 · UniProt Q8DJ02 · UniProt Q8DKY0 · UniProt Q8DL29 · UniProt Q8DKX9 · UniProt Q8DL30 · UniProt Q8DJD9 · UniProt Q8DL31 · UniProt Q8DJ01 · UniProt Q8DKZ4 · UniProt Q8DKZ3 · UniProt Q8DLN5 · UniProt Q8DJU2 · UniProt Q8DMU4 · UniProt Q8DL61
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