Research workbench
AlphaFold monomer V2.0 prediction for NADH-quinone oxidoreductase subunit 8 (Q60019)
Analyse AlphaFold monomer V2.0 prediction for NADH-quinone oxidoreductase subunit 8… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q60019
- Type
- protein
- Length
- 365 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x0D671490EE06E75975e90D7F99F73B20BE618744
- Molecule
- NADH-quinone oxidoreductase subunit 8
- UniProt
- Q60019
- Pockets
- 6 · best druggability 0.72
Structure
1 distinct chain · 69% helix, 1% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | NADH-quinone oxidoreductase subunit 8 | protein | 365 | 69% helix, 1% strand | Q60019 |
Pockets
6 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 59 | 0.72 | 0.97 | 20 | empty |
| 2 | 87 | 0.64 | 0.90 | 21 | empty |
| 3 | 229 | 0.55 | 0.77 | 29 | empty |
| 4 | 234 | 0.53 | 0.76 | 35 | empty |
| 5 | 247 | 0.52 | 0.74 | 35 | empty |
Compared structures
- 6Y11 · Respiratory complex I from Thermus thermophilus · an experimental structure of the same protein · chain A against Q, TM-score 0.94
- 6Q8W · Respiratory complex I from Thermus thermophilus with bound Aureothin. · an experimental structure of the same protein · chain A against Q, TM-score 0.94
- 4HEA · Crystal structure of the entire respiratory complex I from Thermus thermophilus · an experimental structure of the same protein · chain A against H, TM-score 0.94
- 4HEA · Crystal structure of the entire respiratory complex I from thermus thermophilus · an experimental structure of the same protein · chain A against H, TM-score 0.94
- 6I1P · Respiratory complex I from Thermus thermophilus with bound NADH · an experimental structure of the same protein · chain A against H, TM-score 0.94
- 6I1P · Respiratory complex I from thermus thermophilus with bound NADH · an experimental structure of the same protein · chain A against H, TM-score 0.94
- 6Q8O · Respiratory complex I from Thermus thermophilus with bound Piericidin A · an experimental structure of the same protein · chain A against Q, TM-score 0.94
- 6Q8X · Respiratory complex I from Thermus thermophilus with bound Pyridaben. · an experimental structure of the same protein · chain A against Q, TM-score 0.94
- 6ZJL · Respiratory complex I from Thermus thermophilus, NAD+ dataset, major state · an experimental structure of the same protein · chain A against H, TM-score 0.94
- 6ZJL · Respiratory complex I from thermus thermophilus, NAD+ dataset, major state · an experimental structure of the same protein · chain A against H, TM-score 0.94
- 6Y11 · Respiratory complex I from thermus thermophilus · an experimental structure of the same protein · chain A against H, TM-score 0.94
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q60019
- Elsewhere: UniProt Q60019 · AlphaFold DB Q60019
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.