Research workbench
AlphaFold monomer V2.0 prediction for nucleolar complex-associated protein 3 (Q07896)
Analyse AlphaFold monomer V2.0 prediction for nucleolar complex-associated protein 3… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q07896
- Type
- protein
- Length
- 663 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x9073C46348542FfE4327c3F363F9B51B22058e75
- Molecule
- Nucleolar complex-associated protein 3
- UniProt
- Q07896
- Pockets
- 7 · best druggability 0.51
Structure
1 distinct chain · 58% helix, 2% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Nucleolar complex-associated protein 3 | protein | 663 | 58% helix, 2% strand | Q07896 |
Pockets
7 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 250 | 0.51 | 0.75 | 28 | empty |
| 2 | 117 | 0.49 | 0.80 | 14 | empty |
| 3 | 176 | 0.47 | 0.76 | 24 | empty |
| 4 | 189 | 0.44 | 0.74 | 32 | empty |
| 5 | 103 | 0.44 | 0.78 | 16 | empty |
Modifications
Observed in the structure: 1 disulfide (disulfide).
Compared structures
- 7NAC · State E2 nucleolar 60S ribosomal biogenesis intermediate - Composite model · an experimental structure of the same protein · chain A against I, TM-score 0.64
- 7R7A · State E1 nucleolar 60S ribosome biogenesis intermediate - Composite model · an experimental structure of the same protein · chain A against I, TM-score 0.64
- 8V87 · 60S ribosome biogenesis intermediate (Dbp10 post-catalytic structure - Overall map) · an experimental structure of the same protein · chain A against I, TM-score 0.64
- 7R6K · State E2 nucleolar 60S ribosomal intermediate - Model for Noc2/Noc3 region · an experimental structure of the same protein · chain A against I, TM-score 0.63
- 6EM5 · State D architectural model (NSA1-tap flag-YTM1) - visualizing the assembly pathway of… · an experimental structure of the same protein · chain A against I, TM-score 0.56
- 6EM5 · State D architectural model (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of… · an experimental structure of the same protein · chain A against I, TM-score 0.56
- 6ELZ · State E (TAP-Flag-Ytm1 E80A) - Visualizing the assembly pathway of nucleolar pre-60S… · an experimental structure of the same protein · chain A against I, TM-score 0.54
- 7OHR · Nog1-TAP associated immature ribosomal particle population E from S. cerevisiae · an experimental structure of the same protein · chain A against I, TM-score 0.52
- 7R72 · State E1 nucleolar 60S ribosome biogenesis intermediate - Spb4 local model · an experimental structure of the same protein · chain A against I, TM-score 0.44
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q07896
- Elsewhere: UniProt Q07896 · AlphaFold DB Q07896
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